Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0042236 PREDICTED: homeobox protein knotted-1-like 3 isoform X3 [Nelumbo nucifera] Chr14 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr7.260 chr7 + View
Acer truncatum Atru.chr7.2500 chr7 - View
Actinidia chinensis Actinidia21910 Lachesis_group15 - View
Actinidia chinensis Actinidia04246 Lachesis_group1 - View
Avicennia marina MSTRG.26315 ScioBoG_52287_HRSCAF_52434 + View
Avicennia marina MSTRG.6093 ScioBoG_102839_HRSCAF_103093 - View
Aquilegia oxysepala Aqoxy7G03531 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.F096Y2 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZFW2W7 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.11 - View
Amborella trichopoda ATR0629G063 AmTr_v1.0_scaffold00026 + View
Capsicum annuum CAN.G518.19 PGAv.1.6.scaffold518 + View
Cannabis sativa CANSAT11G0116 NC_044377.1 + View
Cicer arietinum L. Ca_21612_v3 Ca_LG7_v3 + View
Corylus avellana Haze_21458 Similar to Homeobox protein knotted-1-like 3 (Malus domestica OX%3D3750) 3 + View
Corylus avellana Haze_19317 Similar to KNAT3: Homeobox protein knotted-1-like 3 (Arabidopsis thaliana OX%3D3702) 7 + View
Coffea canephora Cc06_g07410 Homeobox protein knotted-1-like 3 chr6 + View
Coffea canephora Cc08_g00210 Homeobox protein knotted-1-like 3 chr8 + View
Citrus clementina Ciclev10008821m.g scaffold_1 + View
Carpinus fangiana Cfa020889 Cfa08 + View
Carya illinoinensis CiPaw.15G181600 PTHR11850//PTHR11850:SF122//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED // SUBFAMILY NOT NAMED Chr15 + View
Carica papaya Cpa.g.sc46.88 supercontig_46 - View
Daucus carota DCAR_017764 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv41423 GWHABJS00000013 + View
Davidia involucrata Dinv15888 GWHABJS00000017 - View
Davidia involucrata Dinv43187 GWHABJS00000085 - View
Davidia involucrata Dinv42913 GWHABJS00000085 + View
Durio zibethinus Duzib150G1394 NW_019167882.1 - View
Durio zibethinus Duzib187G0559 NW_019167860.1 + View
Durio zibethinus Duzib168G1603 NW_019168159.1 + View
Eucalyptus grandis Eucgr.C00434 Chr03 + View
Eucalyptus grandis Eucgr.C02727 Chr03 + View
Erythranthe guttata Migut.K00376 scaffold_11 + View
Erythranthe guttata Migut.J01270 scaffold_10 - View
Fragaria x ananassa FAN19G1499 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb1-4 - View
Fragaria x ananassa FAN23G2852 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb1-3 + View
Fragaria x ananassa FAN26G1186 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb1-2 - View
Fragaria x ananassa FAN24G3512 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-2 - View
Fragaria x ananassa FAN20G1474 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-3 + View
Fragaria x ananassa FAN27G1197 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb2-1 + View
Fragaria x ananassa FAN28G0717 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb1-1 - View
Fragaria vesca FvH4_1g01720 PTHR11850//PTHR11850:SF122 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Fvb1 + View
Gossypium hirsutum Gohir.A06G049900 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED A06 + View
Gossypium hirsutum Gohir.D05G012000 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED D05 + View
Gossypium hirsutum Gohir.D06G049200 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED D06 + View
Gossypium hirsutum Gohir.A05G011300 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED A05 + View
Glycine max Glyma.13G157300 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Gm13 + View
Glycine max Glyma.17G104800 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Gm17 + View
Glycine max Glyma.15G202200 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Gm15 - View
Glycine max Glyma.06G065200 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm06 + View
Glycine max Glyma.04G064100 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Gm04 + View
Gossypium raimondii Gorai.010G117100 Chr10 - View
Gossypium raimondii Gorai.009G012300 Chr09 + View
Gossypium raimondii Gorai.010G056100 Chr10 + View
Helianthus annuus HanXRQChr05g0143261 Probable homeobox protein knotted-1-like LET12 HanXRQChr05 - View
Hydrangea macrophylla Hma1.2p1_0182F.1_g080510 Hma1.2p1_0182F.1 - View
Lupinus albus Lalb_Chr07g0179521 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Lalb_Chr07 - View
Lupinus albus Lalb_Chr11g0072861 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Lalb_Chr11 + View
Lotus japonicus Lj4g0025820 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED chr4 + View
Lotus japonicus Lj6g0027679 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED chr6 + View
Lonicera japonica Lj8C732G3 GWHAAZE00000008 - View
Lonicera japonica Lj9A707G56 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_8_63201 Lsat_1_v8_lg_8 + View
Magnolia biondii MBI14_g46656_MAGBIO AED:0.05 Chr14 - View
Magnolia biondii MBI15_g03062_MAGBIO AED:0.14 Chr15 - View
Malus domestica MD02G1012900 KNOTTED1-like homeobox gene 3 Chr02 + View
Malus domestica MD15G1159800 KNOTTED1-like homeobox gene 3 Chr15 + View
Malus domestica MD15G1130800 KNOTTED1-like homeobox gene 3 Chr15 - View
Manihot esculenta Manes.14G138700 Chromosome14 - View
Manihot esculenta Manes.06G041200 Chromosome06 + View
Medicago truncatula Medtr4g116545 class II knotted-like homeobox protein chr4 - View
Medicago truncatula Medtr2g461240 class II knotted-like homeobox protein chr2 - View
Nelumbo nucifera Nn8g39719 chr8 - View
Nelumbo nucifera Nn2g12249 chr2 - View
Nicotiana tabacum Nitab4.5_0005330g0080 KNOX2 Nitab4.5_0005330 + View
Nicotiana tabacum Nitab4.5_0001751g0100 KNOX2 Nitab4.5_0001751 + View
Nicotiana tabacum Nitab4.5_0001021g0050 Homeobox KN domain, KNOX1, Homeobox domain, KNOX2, Homeodomain-like Nitab4.5_0001021 + View
Olea europaea Oeu055915.1 scaffold707 + View
Petunia axillaris Peaxi162Scf00116g00083 Homeobox protein knotted-1-like 3 Peaxi162Scf00116 + View
Prunus persica Prupe.1G486200 Pp01 - View
Prunus persica Prupe.7G254700 Pp07 + View
Pisum sativum Psat4g033160 KNOX2 domain chr4LG4 - View
Papaver somniferum PSO017G0363 NC_039362.1 + View
Papaver somniferum PSO170G5952 NC_039360.1 - View
Populus trichocarpa Potri.018G114100 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Chr18 + View
Populus trichocarpa Potri.006G259400 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr06 - View
Populus trichocarpa Potri.018G022700 PTHR11850:SF122 - HOMEOBOX PROTEIN KNOTTED-1-LIKE 3-RELATED Chr18 + View
Populus trichocarpa Potri.006G190000 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Chr06 + View
Phaseolus vulgaris Phvul.003G174900 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Chr03 - View
Phaseolus vulgaris Phvul.009G090500 Chr09 + View
Phaseolus vulgaris Phvul.009G209500 PTHR11850//PTHR11850:SF127 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED Chr09 + View
Quercus lobata QL02p020199 CM012294 + View
Quercus lobata QL02p091335 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr2g0086661 RcHm_v2.0_Chr2 + View
Rosa chinensis RcHm_v2.0_Chr6g0297211 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim01G0049800 chr01 + View
Rhododendron simsii Rhsim03G0254400 chr03 + View
Salvia bowleyana SalBow1G8588 GWHASIU00000001 + View
Salvia bowleyana SalBow4G0593 GWHASIU00000008 + View
Salix brachista Sabra18G0097000 GWHAAZH00000018 + View
Salix brachista Sabra06G0146000 GWHAAZH00000006 + View
Sechium edule Sed0019443 LG13 + View
Solanum lycopersicum Solyc12g010410.3 Homeobox protein knotted-1-like 3 (AHRD V3.3 *** A0A1U8H944_CAPAN) SL4.0ch12 + View
Solanum lycopersicum Solyc07g007120.3 class II knotted-like homeodomain protein SL4.0ch07 + View
Solanum pennellii Sopen07g003170 A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia | KNOTTED1-like homeobox gene 3 (KNAT3) | FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity | INVOLVED IN: response to light stimulus, detection of cytokinin stimulus, cellular response to cytokine stimulus | LOCATED IN: cytosol, nucleus | EXPRESSED IN: 35 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: ELK , KNOX1 , Homeobox , Homeodomain-like , KNOX2 , Homeodomain-related | BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4 Spenn-ch07 + View
Solanum pennellii Sopen12g005430 A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia | KNOTTED1-like homeobox gene 3 (KNAT3) | FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity | INVOLVED IN: response to light stimulus, detection of cytokinin stimulus, cellular response to cytokine stimulus | LOCATED IN: cytosol, nucleus | EXPRESSED IN: 35 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: ELK , KNOX1 , Homeobox , Homeodomain-like , KNOX2 , Homeodomain-related | BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4 Spenn-ch12 + View
Solanum tuberosum PGSC0003DMG400007887 Homeobox protein knotted-1-like LET12 ST4.03ch12 - View
Solanum tuberosum PGSC0003DMG400030737 Homeobox protein knotted-1-like LET12 ST4.03ch07 + View
Trochodendron aralioides TAR625G0821 group4 + View
Trochodendron aralioides TAR626G0978 group3 - View
Trochodendron aralioides TAR383G0568 group10 + View
Trochodendron aralioides TAR636G0657 group1 + View
Theobroma cacao Thecc.09G141900 Chromosome_9 - View
Theobroma cacao Thecc.09G019600 Chromosome_9 + View
Trifolium pratense TPR.G15782 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI34G1381 NC_052235.1 - View
Tripterygium wilfordii TWI63G0121 NC_052240.1 - View
Vaccinium macrocarpon vmacro21881 Similar to LET12: Homeobox protein knotted-1-like LET12 (Solanum lycopersicum OX%3D4081) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro06108 Similar to LET12: Homeobox protein knotted-1-like LET12 (Solanum lycopersicum OX%3D4081) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G3335 CM024074.1 - View
Vigna mungo VMungo1309G2292 CM024072.1 - View
Vigna mungo VMungo1309G1499 CM024072.1 - View
Vitis vinifera GSVIVG01012897001 chr11 - View