Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0015436 brca1 associated ring domain, putative [Ricinus communis] Chr13 - View
CSS0041664 PREDICTED: pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like [Vitis vinifera] Chr9 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr4.1884 chr4 - View
Acer truncatum Atru.chr4.2045 chr4 - View
Avicennia marina MSTRG.24660 ScioBoG_4088_HRSCAF_4107 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GZCK2M K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) arahy.Tifrunner.gnm1.Arahy.06 - View
Arabidopsis thaliana AT1G04020 breast cancer associated RING 1 Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains%2C which function in phosphorylation-dependent protein%E2%80%93protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. breast cancer associated RING 1 (BARD1)%3B FUNCTIONS IN: transcription coactivator activity%2C DNA binding%3B INVOLVED IN: DNA repair%2C regulation of meristem structural organization%2C leaf development%3B LOCATED IN: intracellular%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C BRCT (InterPro:IPR001357)%3B BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1)%3B Has 5889 Blast hits to 5527 proteins in 313 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 4435%3B Fungi - 374%3B Plants - 570%3B Viruses - 11%3B Other Eukaryotes - 489 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC06g34593 ChrC06 - View
Brassica carinata BcaC02g11443 ChrC02 + View
Brassica carinata BcaC06g31653 ChrC06 - View
Brassica napus A07p09130 A07 - View
Capsicum annuum CAN.G812.27 PGAv.1.6.scaffold812 + View
Cicer arietinum L. Ca_06770_v3 Ca_LG3_v3 - View
Cicer arietinum L. Ca_09795_v3 Ca_LG4_v3 - View
Coffea canephora Cc01_g17980 Putative Protein BREAST CANCER SUSCEPTIBILITY 1 homolog chr1 - View
Citrus clementina Ciclev10006568m.g scaffold_9 + View
Carpinus fangiana Cfa022923 scaffold13 - View
Cardamine hirsuta CARHR221380 Pentatricopeptide repeat-containing protein Chr7 - View
Cardamine hirsuta CARHR179010 Pentatricopeptide repeat-containing protein Chr6 - View
Carya illinoinensis CiPaw.01G176100 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr01 - View
Citrullus lanatus ClCG11G010750 Pentatricopeptide repeat-containing protein CG_Chr11 - View
Cucumis melo MELO3C003997.2 Pentatricopeptide repeat-containing family protein chr05 - View
Corchorus olitorius COL.COLO4_15995 hypothetical protein AWUE01015852.1 + View
Carica papaya Cpa.g.sc59.24 supercontig_59 + View
Carica papaya Cpa.g.sc44.35 supercontig_44 + View
Chenopodium quinoa AUR62002148 PCMP-H32: Putative pentatricopeptide repeat-containing protein At3g23330 C_Quinoa_Scaffold_4480 + View
Chenopodium quinoa AUR62035891 PCMP-H73: Pentatricopeptide repeat-containing protein At1g15510, chloroplastic C_Quinoa_Scaffold_1700 - View
Daucus carota DCAR_018508 hypothetical protein DCARv2_Chr5 + View
Daucus carota DCAR_030771 hypothetical protein DCARv2_Chr9 + View
Davidia involucrata Dinv16381 GWHABJS00000007 + View
Durio zibethinus Duzib133G0831 NW_019167938.1 + View
Durio zibethinus Duzib138G0763 NW_019167893.1 + View
Erigeron canadensis ECA248G0664 Conyza_canadensis_scaffold:9 + View
Eucalyptus grandis Eucgr.H02895 Chr08 - View
Eutrema salsugineum Thhalv10020184m.g PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_13 - View
Fragaria x ananassa FAN17G0892 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb4-2 - View
Fragaria x ananassa FAN12G0454 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb4-3 - View
Fragaria vesca FvH4_4g05100 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb4 + View
Gossypium hirsutum Gohir.A11G133000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A11 + View
Glycine max Glyma.20G199200 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm20 - View
Glycine max Glyma.03G165600 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) Gm03 + View
Glycine max Glyma.19G166900 PTHR13763 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 Gm19 + View
Gossypium raimondii Gorai.007G149300 Chr07 + View
Helianthus annuus HanXRQChr10g0280791 Probable tetratricopeptide repeat (TPR)-like superfamily protein HanXRQChr10 - View
Lotus japonicus Lj1g0010012 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) chr1 - View
Lotus japonicus Lj5g0016821 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) chr5 + View
Lonicera japonica Lj6P638T29 GWHAAZE00000006 + View
Magnolia biondii MBI09_g08098_MAGBIO AED:0.20 Chr09 - View
Malus domestica MD05G1192200 breast cancer associated RING 1 Chr05 - View
Malus domestica MD10G1178800 breast cancer associated RING 1 Chr10 - View
Manihot esculenta Manes.12G035400 Chromosome12 + View
Medicago truncatula Medtr7g098170 breast cancer susceptibility protein, putative chr7 + View
Nelumbo nucifera Nn1g03008 chr1 + View
Nicotiana tabacum Nitab4.5_0001041g0090 Pentatricopeptide repeat, Tetratricopeptide-like helical Nitab4.5_0001041 + View
Petunia axillaris Peaxi162Scf00041g00175 Pentatricopeptide repeat-containing protein Peaxi162Scf00041 + View
Punica granatum PGR031G1198 NC_045127.1 + View
Papaver somniferum PSO017G1662 NC_039362.1 + View
Populus trichocarpa Potri.008G173500 PF01535 - PPR repeat (PPR) Chr08 + View
Populus trichocarpa Potri.010G063900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr10 - View
Phaseolus vulgaris Phvul.001G163300 Chr01 + View
Quercus lobata QL02p059847 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr6g0287261 RcHm_v2.0_Chr6 - View
Rosa chinensis RcHm_v2.0_Chr4g0396021 RcHm_v2.0_Chr4 + View
Rhododendron simsii Rhsim01G0261400 chr01 - View
Salix brachista Sabra08G0132500 GWHAAZH00000008 + View
Salix brachista Sabra10G0043100 GWHAAZH00000010 + View
Simmondsia chinensis Sc25g0003720 GWHAASQ00000025 - View
Sechium edule Sed0014923 LG01 - View
Sapria himalayana SHI00718 scaffold1_25991295 + View
Solanum lycopersicum Solyc09g090220.3 Pentatricopeptide repeat (AHRD V3.3 *** A0A200QEC4_9MAGN) SL4.0ch09 + View
Solanum lycopersicum Solyc03g005800.4 UDP-N-acetylglucosamine transferase subunit ALG14 (AHRD V3.3 *** A0A2K3NM56_TRIPR) SL4.0ch03 + View
Solanum lycopersicum Solyc09g090780.1 Pentatricopeptide repeat (AHRD V3.3 *** A0A200Q2Y2_9MAGN) SL4.0ch09 - View
Solanum pennellii Sopen09g033730 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch09 - View
Solanum pennellii Sopen09g033130 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG400017219 Pentatricopeptide repeat-containing protein ST4.03ch09 + View
Solanum tuberosum PGSC0003DMG400018731 Pentatricopeptide repeat-containing protein, chloroplastic ST4.03ch11 - View
Trochodendron aralioides TAR365G0547 group16 + View
Trochodendron aralioides TAR633G0994 group2 - View
Trochodendron aralioides TAR365G0246 group16 - View
Trochodendron aralioides TAR362G1132 group17 + View
Theobroma cacao Thecc.01G253100 Breast cancer associated RING 1 Chromosome_1 - View
Tripterygium wilfordii TWI09G1510 NC_052245.1 - View
Tripterygium wilfordii TWI09G1242 NC_052245.1 - View
Vaccinium macrocarpon vmacro15479 Similar to PCMP-H24: Pentatricopeptide repeat-containing protein At4g02750 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro02682 Similar to PCMP-H44: Pentatricopeptide repeat-containing protein At2g03880, mitochondrial (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01027951001 chr5 + View
Zea mays Zm00001eb221840 Zm00001e012691 Pentatricopeptide repeat-containing protein mitochondrial 5 + View