Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0044702 PIN1-like family protein [Populus trichocarpa] Chr12 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G7050 LG-7 - View
Aethionema arabicum Aa31LG4G10120 LG-4 - View
Aethionema arabicum Aa31LG2G8520 LG-2 + View
Acer truncatum Atru.chr11.548 chr11 + View
Actinidia chinensis Actinidia14973 Lachesis_group14 - View
Actinidia chinensis Actinidia36666 Lachesis_group4 + View
Arabidopsis lyrata AL5G10390 scaffold_5 - View
Arabidopsis lyrata AL2G30460 scaffold_2 + View
Arabidopsis lyrata AL1G36650 scaffold_1 - View
Avicennia marina MSTRG.903 ScioBoG_102831_HRSCAF_103044 - View
Avicennia marina MSTRG.13591 ScioBoG_18778_HRSCAF_18863 - View
Avicennia marina MSTRG.2168 ScioBoG_102834_HRSCAF_103055 + View
Aquilegia oxysepala Aqoxy3G00128 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.2QV4RS K13947 - auxin efflux carrier family (PIN) arahy.Tifrunner.gnm1.Arahy.14 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FCRD5F K13947 - auxin efflux carrier family (PIN) arahy.Tifrunner.gnm1.Arahy.04 - View
Arabidopsis thaliana AT1G23080 Auxin efflux carrier family protein Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots%2C it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone%2C whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs%2C rate-limiting%2C specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. PIN-FORMED 7 (PIN7)%3B FUNCTIONS IN: auxin:hydrogen symporter activity%2C transporter activity%2C auxin efflux transmembrane transporter activity%3B INVOLVED IN: response to cyclopentenone%2C root development%2C pattern specification process%2C auxin polar transport%2C longitudinal axis specification%3B LOCATED IN: plasma membrane%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Auxin efflux carrier%2C subgroup (InterPro:IPR014024)%2C Auxin efflux carrier (InterPro:IPR004776)%3B BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1)%3B Has 1748 Blast hits to 1583 proteins in 451 species: Archae - 37%3B Bacteria - 919%3B Metazoa - 14%3B Fungi - 2%3B Plants - 486%3B Viruses - 0%3B Other Eukaryotes - 290 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT2G01420 Auxin efflux carrier family protein Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root%2C PIN4 is detected around the quiescent center and cells surrounding it%2C and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452). PIN-FORMED 4 (PIN4)%3B FUNCTIONS IN: auxin:hydrogen symporter activity%2C transporter activity%3B INVOLVED IN: root development%2C pattern specification process%2C auxin polar transport%3B LOCATED IN: endomembrane system%2C integral to membrane%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Auxin efflux carrier%2C subgroup (InterPro:IPR014024)%2C Auxin efflux carrier (InterPro:IPR004776)%3B BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1)%3B Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31%3B Bacteria - 1046%3B Metazoa - 12%3B Fungi - 10%3B Plants - 485%3B Viruses - 0%3B Other Eukaryotes - 227 (source: NCBI BLink). Chr2 - View
Arabidopsis thaliana AT1G70940 Auxin efflux carrier family protein A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues%2C with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots%2C PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells%2C at the basal side of vascular cells%2C and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in regulating PIN3 trafficking to the plasma membrane. PIN-FORMED 3 (PIN3)%3B FUNCTIONS IN: auxin:hydrogen symporter activity%2C transporter activity%3B INVOLVED IN: in 8 processes%3B LOCATED IN: lateral plasma membrane%2C plasma membrane%2C vesicle membrane%2C cell surface%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Auxin efflux carrier%2C subgroup (InterPro:IPR014024)%2C Auxin efflux carrier (InterPro:IPR004776)%3B BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G23080.1)%3B Has 1983 Blast hits to 1757 proteins in 550 species: Archae - 37%3B Bacteria - 1198%3B Metazoa - 14%3B Fungi - 0%3B Plants - 487%3B Viruses - 0%3B Other Eukaryotes - 247 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB03g14855 ChrB03 + View
Brassica carinata BcaB07g30400 ChrB07 + View
Brassica carinata BcaC08g46541 ChrC08 + View
Brassica carinata BcaC03g17037 ChrC03 - View
Brassica carinata BcaC03g15254 ChrC03 + View
Brassica carinata BcaB03g14170 ChrB03 + View
Brassica carinata BcaC08g45795 ChrC08 - View
Brassica napus C02p28450 C02 + View
Brassica napus C02p49470 C02 - View
Brassica napus C06p45040 C06 + View
Brassica napus C06p35840 C06 - View
Brassica napus A02p31940 A02 - View
Brassica napus A07p37360 A07 + View
Brassica napus A07p30870 A07 - View
Brassica oleracea BolC2t08888H C2 + View
Brassica oleracea BolC6t39562H C6 + View
Brassica oleracea BolC8t49810H C8 - View
Brassica oleracea BolC2t11032H C2 - View
Brassica rapa BraA02t08204Z A02 - View
Capsicum annuum CAN.G1298.12 PGAv.1.6.scaffold1298 - View
Cicer arietinum L. Ca_18731_v3 Ca_LG6_v3 - View
Corylus avellana Haze_11003 Similar to PIN3: Auxin efflux carrier component 3 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc11_g08680 Auxin efflux carrier component 3 chr11 + View
Carpinus fangiana Cfa008612 Cfa03 - View
Cardamine hirsuta CARHR023460 Auxin efflux carrier family protein Chr1 - View
Cardamine hirsuta CARHR143930 Auxin efflux carrier family protein Chr5 - View
Cardamine hirsuta CARHR064200 Auxin efflux carrier family protein Chr2 + View
Carya illinoinensis CiPaw.06G011700 PF03547 - Membrane transport protein (Mem_trans) Chr06 + View
Carya illinoinensis CiPaw.05G250000 PTHR31752//PTHR31752:SF12//PTHR31752:SF18 - FAMILY NOT NAMED // SUBFAMILY NOT NAMED // AUXIN EFFLUX CARRIER COMPONENT 3-RELATED Chr05 - View
Citrullus lanatus ClCG01G006060 Auxin efflux carrier CG_Chr01 - View
Cucumis melo MELO3C005326.2 Auxin efflux carrier component chr09 - View
Carica papaya Cpa.g.sc65.140 supercontig_65 - View
Capsella rubella Carub.0001s2260 K13947 - auxin efflux carrier family (PIN) scaffold_1 - View
Capsella rubella Carub.0005s0038 K13947 - auxin efflux carrier family (PIN) scaffold_5 - View
Cucumis sativus L. CsaV3_5G028620 Auxin efflux carrier component chr5 - View
Daucus carota DCAR_023603 hypothetical protein DCARv2_Chr7 + View
Daucus carota DCAR_026777 hypothetical protein DCARv2_Chr8 + View
Daucus carota DCAR_007294 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv07648 GWHABJS00000008 + View
Davidia involucrata Dinv05175 GWHABJS00000018 - View
Durio zibethinus Duzib268G0530 NW_019168270.1 - View
Durio zibethinus Duzib251G0413 NW_019167971.1 - View
Durio zibethinus Duzib248G0423 NW_019168048.1 + View
Erigeron canadensis ECA233G3503 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA234G1528 Conyza_canadensis_scaffold:4 - View
Eucalyptus grandis Eucgr.B02902 Chr02 + View
Eucalyptus grandis Eucgr.G02187 Chr07 + View
Erythranthe guttata Migut.E00429 scaffold_5 - View
Eutrema salsugineum Thhalv10000822m.g K13947 - auxin efflux carrier family (PIN) scaffold_20 - View
Eutrema salsugineum Thhalv10018257m.g K13947 - auxin efflux carrier family (PIN) scaffold_9 - View
Eutrema salsugineum Thhalv10007111m.g K13947 - auxin efflux carrier family (PIN) scaffold_5 + View
Fragaria x ananassa FAN12G0702 K13947 - auxin efflux carrier family (PIN) Fvb4-3 + View
Fragaria x ananassa FAN17G1212 K13947 - auxin efflux carrier family (PIN) Fvb4-2 + View
Fragaria x ananassa FAN07G2856 K13947 - auxin efflux carrier family (PIN) Fvb4-4 + View
Fragaria x ananassa FAN22G0979 K13947 - auxin efflux carrier family (PIN) Fvb4-1 - View
Fragaria vesca FvH4_4g32450 K13947 - auxin efflux carrier family (PIN) Fvb4 - View
Gossypium hirsutum Gohir.D01G145100 K13947 - auxin efflux carrier family (PIN) D01 + View
Gossypium hirsutum Gohir.D02G144466 PTHR31752:SF18 - AUXIN EFFLUX CARRIER COMPONENT 3-RELATED D02 + View
Gossypium hirsutum Gohir.A01G152000 PF03547 - Membrane transport protein (Mem_trans) A01 + View
Gossypium hirsutum Gohir.A03G121500 PF03547 - Membrane transport protein (Mem_trans) A03 + View
Glycine max Glyma.07G217900 PTHR31752//PTHR31752:SF12//PTHR31752:SF18 - FAMILY NOT NAMED // SUBFAMILY NOT NAMED // AUXIN EFFLUX CARRIER COMPONENT 3-RELATED Gm07 - View
Glycine max Glyma.20G014300 K13947 - auxin efflux carrier family (PIN) Gm20 - View
Gossypium raimondii Gorai.005G161800 Chr05 + View
Gossypium raimondii Gorai.002G179000 Chr02 + View
Helianthus annuus HanXRQChr17g0566911 Putative auxin efflux carrier HanXRQChr17 + View
Hydrangea macrophylla Hma1.2p1_0096F.1_g047880 Hma1.2p1_0096F.1 + View
Lupinus albus Lalb_Chr05g0219481 K13947 - auxin efflux carrier family (PIN) Lalb_Chr05 - View
Lupinus albus Lalb_Chr16g0384961 K13947 - auxin efflux carrier family (PIN) Lalb_Chr16 - View
Lotus japonicus Lj4g0026611 K13947 - auxin efflux carrier family (PIN) chr4 - View
Lotus japonicus Lj2g0013882 K13947 - auxin efflux carrier family (PIN) chr2 + View
Lonicera japonica Lj6C746G2 GWHAAZE00000006 + View
Lonicera japonica Lj3C872T7 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_4_14360 K13947 - auxin efflux carrier family (PIN) Lsat_1_v8_lg_4 - View
Lactuca sativa Lsat_1_v5_gn_3_54900 PF03547 - Membrane transport protein (Mem_trans) Lsat_1_v8_lg_3 - View
Lactuca sativa Lsat_1_v5_gn_8_44041 K13947 - auxin efflux carrier family (PIN) Lsat_1_v8_lg_8 - View
Malus domestica MD16G1027900 Auxin efflux carrier family protein Chr16 + View
Malus domestica MD13G1025300 Auxin efflux carrier family protein Chr13 + View
Manihot esculenta Manes.17G077100 Chromosome17 - View
Manihot esculenta Manes.15G127700 Chromosome15 - View
Medicago truncatula Medtr1g030890 auxin efflux carrier family transporter chr1 - View
Medicago truncatula Medtr4g084870 auxin efflux carrier family transporter chr4 + View
Nelumbo nucifera Nn3g18227 chr3 - View
Olea europaea Oeu045863.1 chr8 + View
Petunia axillaris Peaxi162Scf00159g00068 Auxin efflux carrier family protein Peaxi162Scf00159 - View
Petunia axillaris Peaxi162Scf00253g01129 Auxin efflux carrier family protein Peaxi162Scf00253 + View
Punica granatum PGR102G2258 NC_045129.1 - View
Punica granatum PGR119G1805 NC_045132.1 + View
Prunus persica Prupe.1G324900 Pp01 - View
Pisum sativum Psat6g043160 Membrane transport protein chr6LG2 + View
Papaver somniferum PSO478G1018 NC_039361.1 - View
Papaver somniferum PSO017G2599 NC_039362.1 + View
Populus trichocarpa Potri.010G112800 K13947 - auxin efflux carrier family (PIN) Chr10 + View
Populus trichocarpa Potri.008G129400 K13947 - auxin efflux carrier family (PIN) Chr08 - View
Phaseolus vulgaris Phvul.002G094000 K13947 - auxin efflux carrier family (PIN) Chr02 - View
Phaseolus vulgaris Phvul.003G032500 K13947 - auxin efflux carrier family (PIN) Chr03 - View
Quercus lobata QL01p001683 1 + View
Rosa chinensis RcHm_v2.0_Chr4g0441311 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim09G0097600 chr09 + View
Striga asiatica SGA_v2.0_scaffold39G15174 scaffold39 - View
Salvia bowleyana SalBow8G2888 GWHASIU00000004 + View
Salvia bowleyana SalBow8G5455 GWHASIU00000004 + View
Salix brachista Sabra10G0083000 GWHAAZH00000010 + View
Salix brachista Sabra08G0098100 GWHAAZH00000008 - View
Simmondsia chinensis Sc14g0007130 GWHAASQ00000014 + View
Sechium edule Sed0016911 LG11 + View
Solanum lycopersicum Solyc04g007690.3 SlPIN3 SL4.0ch04 - View
Solanum lycopersicum Solyc05g008060.4 SlPIN4 SL4.0ch05 + View
Schrenkiella parvula Sp2g12860 K13947 - auxin efflux carrier family (PIN) ch2-4 - View
Schrenkiella parvula Sp5g26110 K13947 - auxin efflux carrier family (PIN) ch5-6 + View
Schrenkiella parvula Sp1g20520 K13947 - auxin efflux carrier family (PIN) ch1-1 - View
Solanum pennellii Sopen04g002780 A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane. | PIN-FORMED 3 (PIN3) | FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity | INVOLVED IN: in 8 processes | LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup , Auxin efflux carrier | BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein Spenn-ch04 - View
Solanum pennellii Sopen05g003900 A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane. | PIN-FORMED 3 (PIN3) | FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity | INVOLVED IN: in 8 processes | LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup , Auxin efflux carrier | BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein Spenn-ch05 + View
Solanum tuberosum PGSC0003DMG400005956 Auxin efflux carrier ST4.03ch04 - View
Solanum tuberosum PGSC0003DMG400030495 Auxin efflux carrier ST4.03ch05 - View
Selenicereus undatus Hund24978 Scaffold_3410 + View
Trochodendron aralioides TAR622G0253 group8 + View
Trochodendron aralioides TAR629G3373 group0 - View
Theobroma cacao Thecc.02G281800 Auxin efflux carrier family protein Chromosome_2 - View
Tarenaya hassleriana THA.LOC104805063 auxin efflux carrier component 4-like NW_010961290.1 - View
Tarenaya hassleriana THA.LOC104824144 auxin efflux carrier component 4-like NW_010966881.1 + View
Tarenaya hassleriana THA.LOC104823010 auxin efflux carrier component 3 NW_010966822.1 + View
Trifolium pratense TPR.G36901 Tp57577_TGAC_v2_LG1 - View
Trifolium pratense TPR.G38277 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI79G1011 NC_052238.1 + View
Tripterygium wilfordii TWI31G1239 NC_052233.1 + View
Utricularia gibba unitig_62.g23733 unitig_62 - View
Vaccinium macrocarpon vmacro10644 Similar to PIN3: Auxin efflux carrier component 3 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G0078 CM024069.1 - View
Vitis vinifera GSVIVG01011756001 chr1 - View