Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0038844 PREDICTED: uncharacterized protein LOC104598774 [Nelumbo nucifera] Chr13 - View
CSS0004963 PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Vitis vinifera] Chr3 + View
CSS0021219 PREDICTED: uncharacterized protein LOC100261960 [Vitis vinifera] Chr5 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G28650 LG-1 + View
Acer truncatum Atru.chr5.981 chr5 + View
Acer truncatum Atru.chr2.201 chr2 - View
Actinidia chinensis Actinidia17907 Lachesis_group24 - View
Actinidia chinensis Actinidia16859 Lachesis_group12 + View
Actinidia chinensis Actinidia20989 Lachesis_group9 - View
Actinidia chinensis Actinidia21395 Lachesis_group19 - View
Arabidopsis lyrata AL4G46910 scaffold_4 + View
Avicennia marina MSTRG.18095 ScioBoG_22153_HRSCAF_22259 + View
Amaranthus hybridus Ah.02g112340 AmaHy_arrow1_Scaffold_2 - View
Aquilegia oxysepala Aqoxy2G02739 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QXLP7L PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) arahy.Tifrunner.gnm1.Arahy.19 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IPGA62 PF04795 - PAPA-1-like conserved region (PAPA-1) arahy.Tifrunner.gnm1.Arahy.09 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0F9TFU PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.W1X4YZ PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) arahy.Tifrunner.gnm1.Arahy.06 + View
Arabidopsis thaliana AT2G47350 HIT zinc finger and PAPA-1-like domain-containing protein HIT zinc finger %3BPAPA-1-like conserved region%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C HIT-type (InterPro:IPR007529)%2C PAPA-1-like conserved region (InterPro:IPR006880)%3B BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1)%3B Has 3160 Blast hits to 2461 proteins in 330 species: Archae - 7%3B Bacteria - 184%3B Metazoa - 1235%3B Fungi - 390%3B Plants - 202%3B Viruses - 26%3B Other Eukaryotes - 1116 (source: NCBI BLink). Chr2 + View
Amborella trichopoda ATR0796G276 AmTr_v1.0_scaffold00045 + View
Brassica carinata BcaB02g08784 ChrB02 - View
Brassica carinata BcaB01g03171 ChrB01 - View
Brassica carinata BcaC01g05034 ChrC01 - View
Brassica carinata BcaB06g29452 ChrB06 - View
Brassica napus C03p30920 C03 + View
Brassica napus C04p00590 C04 - View
Brassica napus A03p25920 A03 + View
Brassica napus A05p00550 A05 - View
Brassica oleracea BolC4t21693H C4 - View
Brassica oleracea BolC3t15443H C3 + View
Brassica rapa BraA05t19053Z A05 - View
Brassica rapa BraA03t11809Z A03 + View
Beta vulgaris EL10As5g23542 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Scaffold_0005 - View
Capsicum annuum CAN.G100.66 PGAv.1.6.scaffold100 + View
Capsicum annuum CAN.G1280.31 PGAv.1.6.scaffold1280 - View
Cannabis sativa CANSAT25G2668 NC_044370.1 - View
Cannabis sativa CANSAT78G2492 NC_044376.1 + View
Cicer arietinum L. Ca_09216_v3 Ca_LG3_v3 - View
Corylus avellana Haze_05057 Protein of unknown function 2 - View
Corylus avellana Haze_04057 Protein of unknown function 2 + View
Coffea canephora Cc01_g21510 Putative HIT zinc finger ;PAPA-1-like conserved region chr1 - View
Citrus clementina Ciclev10023762m.g scaffold_3 - View
Citrus clementina Ciclev10004963m.g scaffold_9 + View
Citrus clementina Ciclev10003914m.g scaffold_5 - View
Ceratophyllum demersum CDE09G1391 7 + View
Ceratophyllum demersum CDE02G2681 1 - View
Carpinus fangiana Cfa006706 Cfa02 - View
Carpinus fangiana Cfa005783 Cfa02 + View
Cardamine hirsuta CARHR142740 HIT zinc finger Chr4 + View
Carya illinoinensis CiPaw.07G030000 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr07 - View
Carya illinoinensis CiPaw.07G118500 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr07 - View
Carya illinoinensis CiPaw.08G088900 PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) Chr08 + View
Cucumis melo MELO3C015918.2 HIT zinc finger,PAPA-1-like conserved region, putative chr01 + View
Corchorus olitorius COL.COLO4_23221 PAPA-1-like conserved region AWUE01018173.1 + View
Carica papaya Cpa.g.sc18.58 supercontig_18 - View
Carica papaya Cpa.g.sc9.69 supercontig_9 + View
Chenopodium quinoa AUR62024641 Protein of unknown function C_Quinoa_Scaffold_1992 + View
Chenopodium quinoa AUR62016120 Protein of unknown function C_Quinoa_Scaffold_3256 + View
Chenopodium quinoa AUR62011794 Protein of unknown function C_Quinoa_Scaffold_2008 + View
Chenopodium quinoa AUR62000388 Rpap3: RNA polymerase II-associated protein 3 C_Quinoa_Scaffold_2088 + View
Capsella rubella Carub.0004s3007 PF04795 - PAPA-1-like conserved region (PAPA-1) scaffold_4 + View
Cucumis sativus L. CsaV3_7G030020 INO80 complex subunit B-like conserved region chr7 - View
Daucus carota DCAR_012336 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_002890 hypothetical protein DCARv2_Chr1 + View
Daucus carota DCAR_018293 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv24448 GWHABJS00000005 + View
Davidia involucrata Dinv10110 GWHABJS00000007 + View
Davidia involucrata Dinv33126 GWHABJS00000010 - View
Durio zibethinus Duzib052G0070 NW_019167849.1 - View
Durio zibethinus Duzib138G1716 NW_019167893.1 + View
Durio zibethinus Duzib151G0983 NW_019167904.1 - View
Durio zibethinus Duzib177G1143 NW_019168004.1 - View
Durio zibethinus Duzib133G1523 NW_019167938.1 + View
Erigeron canadensis ECA236G4065 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.K03549 Chr11 - View
Erythranthe guttata Migut.D00076 scaffold_4 + View
Eutrema salsugineum Thhalv10001400m.g KOG3655 - Drebrins and related actin binding proteins scaffold_22 + View
Fragaria x ananassa FAN12G1694 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Fvb4-3 + View
Fragaria x ananassa FAN04G0292 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Fvb5-4 + View
Fragaria x ananassa FAN13G2122 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Fvb5-2 + View
Fragaria x ananassa FAN07G2798 PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) Fvb4-4 + View
Fragaria vesca FvH4_4g19561 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Fvb4 - View
Fragaria vesca FvH4_5g39030 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Fvb5 + View
Gossypium hirsutum Gohir.D07G133300 PF04795 - PAPA-1-like conserved region (PAPA-1) D07 - View
Gossypium hirsutum Gohir.A07G128900 PF04795 - PAPA-1-like conserved region (PAPA-1) A07 - View
Gossypium hirsutum Gohir.A02G054000 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) A02 - View
Glycine max Glyma.19G217200 PF04795 - PAPA-1-like conserved region (PAPA-1) Gm19 - View
Glycine max Glyma.03G220300 PF04795 - PAPA-1-like conserved region (PAPA-1) Gm03 - View
Glycine max Glyma.20G096900 PTHR22904:SF323 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT Gm20 + View
Gossypium raimondii Gorai.001G144600 Chr01 - View
Gossypium raimondii Gorai.005G066400 Chr05 - View
Helianthus annuus HanXRQChr04g0106191 Probable HIT zinc finger ;PAPA-1-like conserved region HanXRQChr04 + View
Helianthus annuus HanXRQChr06g0168121 Probable HIT zinc finger ;PAPA-1-like conserved region HanXRQChr06 - View
Hydrangea macrophylla Hma1.2p1_0486F.1_g163370 Hma1.2p1_0486F.1 - View
Lupinus albus Lalb_Chr18g0046671 PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) Lalb_Chr18 + View
Lotus japonicus Lj1g0005808 PF04795 - PAPA-1-like conserved region (PAPA-1) chr1 - View
Lonicera japonica Lj1A16T39 GWHAAZE00000001 + View
Lonicera japonica Lj5A331T38 GWHAAZE00000005 + View
Magnolia biondii MBI19_g40072_MAGBIO AED:0.05 Chr19 + View
Malus domestica MD12G1205400 HIT zinc finger Chr12 + View
Malus domestica MD13G1155600 HIT zinc finger Chr13 + View
Malus domestica MD03G1292700 HIT zinc finger Chr03 + View
Malus domestica MD16G1155200 Chr16 + View
Manihot esculenta Manes.05G004500 Chromosome05 - View
Manihot esculenta Manes.09G177200 Chromosome09 - View
Medicago truncatula Medtr1g084100 TPR domain protein chr1 - View
Nelumbo nucifera Nn4g25585 chr4 + View
Nicotiana tabacum Nitab4.5_0000363g0210 Zinc finger, HIT-type, INO80 complex subunit B-like conserved region Nitab4.5_0000363 + View
Nicotiana tabacum Nitab4.5_0000368g0010 Zinc finger, HIT-type, INO80 complex subunit B-like conserved region Nitab4.5_0000368 + View
Nicotiana tabacum Nitab4.5_0003540g0120 Zinc finger, HIT-type, INO80 complex subunit B-like conserved region Nitab4.5_0003540 - View
Nicotiana tabacum Nitab4.5_0007407g0090 INO80 complex subunit B-like conserved region, Zinc finger, HIT-type Nitab4.5_0007407 - View
Olea europaea Oeu038024.1 chr12 + View
Oryza sativa ssp. japonica Os12g0561200 Similar to PAPA-1-like conserved region family protein, expressed. Zinc finger, HIT-type domain containing protein. chr12 - View
Oryza sativa ssp. japonica Os05g0129900 Tetratricopeptide-like helical domain containing protein. chr05 - View
Petunia axillaris Peaxi162Scf00691g00418 HIT zinc finger Peaxi162Scf00691 - View
Petunia axillaris Peaxi162Scf00058g00268 HIT zinc finger Peaxi162Scf00058 + View
Punica granatum PGR044G2294 NC_045134.1 - View
Prunus persica Prupe.8G265700 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Pp08 + View
Prunus persica Prupe.6G312500 PF04438//PF04795//PF13414 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) // TPR repeat (TPR_11) Pp06 + View
Pisum sativum Psat3g019600 PAPA-1-like conserved region chr3LG5 - View
Papaver somniferum PSO210G4454 NC_039359.1 + View
Papaver somniferum PSO170G0296 NC_039360.1 + View
Papaver somniferum PSO357G0595 NW_020622934.1 + View
Populus trichocarpa Potri.013G008300 K11666 - INO80 complex subunit B (INO80B, ZNHIT4, PAPA1) Chr13 + View
Populus trichocarpa Potri.002G195066 Chr02 + View
Populus trichocarpa Potri.010G144000 Chr10 - View
Populus trichocarpa Potri.014G119600 PF04795 - PAPA-1-like conserved region (PAPA-1) Chr14 + View
Populus trichocarpa Potri.008G106200 PTHR21561:SF12 - INO80 COMPLEX SUBUNIT B Chr08 + View
Phaseolus vulgaris Phvul.001G213800 Chr01 - View
Quercus lobata QL06p011851 6 - View
Quercus lobata QL12p019533 12 + View
Rosa chinensis RcHm_v2.0_Chr7g0241001 RcHm_v2.0_Chr7 + View
Rosa chinensis RcHm_v2.0_Chr3g0457141 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim13G0004400 chr13 + View
Striga asiatica SGA_v2.0_scaffold376G50288 scaffold376 - View
Salvia bowleyana SalBow3G4348 GWHASIU00000006 + View
Salix brachista Sabra13G0007000 GWHAAZH00000013 + View
Salix brachista Sabra02G0161700 GWHAAZH00000002 - View
Salix brachista Sabra14G0088600 GWHAAZH00000014 + View
Simmondsia chinensis Sc17g0000430 GWHAASQ00000017 + View
Sechium edule Sed0004948 LG09 - View
Sechium edule Sed0018097 LG07 - View
Solanum lycopersicum Solyc06g009600.2 HIT zinc finger and PAPA-1-like domain-containing protein (AHRD V3.3 *-* F4I548_ARATH) SL4.0ch06 + View
Solanum lycopersicum Solyc01g100540.4 HIT zinc finger and PAPA-1-like domain-containing protein (AHRD V3.3 *-* Q8GYE3_ARATH) SL4.0ch01 - View
Solanum lycopersicum Solyc01g079350.3 HIT zinc finger and PAPA-1-like domain-containing protein (AHRD V3.3 *-* F4I548_ARATH) SL4.0ch01 + View
Schrenkiella parvula Sp4g29290 PF04438//PF04795 - HIT zinc finger (zf-HIT) // PAPA-1-like conserved region (PAPA-1) ch4-6 + View
Solanum pennellii Sopen01g031130 HIT zinc finger , PAPA-1-like conserved region | CONTAINS InterPro DOMAIN/s: PAPA-1-like conserved region | BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein Spenn-ch01 + View
Solanum pennellii Sopen06g004230 HIT zinc finger , PAPA-1-like conserved region | LOCATED IN: chloroplast | CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type , PAPA-1-like conserved region | BEST Arabidopsis thaliana protein match is: HIT zinc finger , PAPA-1-like conserved region . Spenn-ch06 + View
Solanum pennellii Sopen01g044050 HIT zinc finger , PAPA-1-like conserved region | LOCATED IN: chloroplast | CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type , PAPA-1-like conserved region | BEST Arabidopsis thaliana protein match is: HIT zinc finger , PAPA-1-like conserved region . Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400009046 Conserved gene of unknown function ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400007283 Conserved gene of unknown function ST4.03ch06 - View
Solanum tuberosum PGSC0003DMG400002766 Conserved gene of unknown function ST4.03ch01 - View
Selenicereus undatus Hund02943 Scaffold_33678 - View
Selenicereus undatus Hund09636 Scaffold_10417 - View
Trochodendron aralioides TAR633G1266 group2 - View
Trochodendron aralioides TAR365G0840 group16 + View
Trochodendron aralioides TAR362G0447 group17 + View
Theobroma cacao Thecc.01G314700 HIT zinc finger Chromosome_1 - View
Theobroma cacao Thecc.04G299200 PAPA-1-like family protein / zinc finger family protein Chromosome_4 - View
Theobroma cacao Thecc.05G323400 Tetratricopeptide repeat (TPR)-like superfamily protein Chromosome_5 - View
Tarenaya hassleriana THA.LOC104818888 uncharacterized protein LOC104818888 isoform X1 NW_010966177.1 + View
Trifolium pratense TPR.G4096 Tp57577_TGAC_v2_LG6 + View
Tripterygium wilfordii TWI18G0419 NC_052241.1 + View
Tripterygium wilfordii TWI36G0984 NC_052237.1 - View
Tripterygium wilfordii TWI73G0888 NC_052232.1 + View
Utricularia gibba unitig_0.g283 unitig_0 - View
Vaccinium macrocarpon vmacro01565 Protein of unknown function chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro02397 Protein of unknown function chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G2602 CM024070.1 - View
Vanilla planifolia HPP92_013522 RNA polymerase II-associated protein 3 *** CM028155.1 + View
Vitis vinifera GSVIVG01028133001 chr7 - View
Vitis vinifera GSVIVG01035006001 chr5 + View
Vitis vinifera GSVIVG01031244001 chr14 + View