Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0018159 PREDICTED: probable calcium-binding protein CML23 [Nelumbo nucifera] Chr1 + View
CSS0023028 PREDICTED: calcium-binding allergen Ole e 8-like [Nicotiana tomentosiformis] Chr2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G3080 LG-2 - View
Aethionema arabicum Aa31LG9G17390 LG-9 + View
Acer truncatum Atru.chr1.1849 chr1 + View
Actinidia chinensis Actinidia17223 Lachesis_group25 - View
Arabidopsis lyrata AL2G24180 scaffold_2 - View
Arabidopsis lyrata AL7G46640 scaffold_7 - View
Avicennia marina MSTRG.15323 ScioBoG_19538_HRSCAF_19626 + View
Amaranthus hybridus Ah.16g101220 Probable calcium-binding protein CML18 (Calmodulin-like protein 18) AmaHy_arrow1_Scaffold_16 - View
Aquilegia oxysepala Aqoxy3G00094 CHR03 - View
Arabidopsis thaliana AT1G66400 calmodulin like 23 Encodes a calmodulin-like protein. Regulates nitric oxide levels and transition to flowering. calmodulin like 23 (CML23)%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: regulation of flower development%2C regulation of nitric oxide metabolic process%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G37770.1)%3B Has 30871 Blast hits to 18969 proteins in 1622 species: Archae - 1%3B Bacteria - 165%3B Metazoa - 12615%3B Fungi - 7465%3B Plants - 6190%3B Viruses - 4%3B Other Eukaryotes - 4431 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT5G37770 EF hand calcium-binding protein family Encodes a protein with 40%25 similarity to calmodulin. Binds Ca(2+) and%2C as a consequence%2C undergoes conformational changes. CML24 expression occurs in all major organs%2C and transcript levels are increased from 2- to 15-fold in plants subjected to touch%2C darkness%2C heat%2C cold%2C hydrogen peroxide%2C abscisic acid (ABA)%2C and indole-3-acetic acid. However%2C CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress%3B in regions undergoing growth%3B in vascular tissues and various floral organs%3B and in stomata%2C trichomes%2C and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth%2C are defective in long-day induction of flowering%2C and have enhanced tolerance to CoCl(2)%2C molybdic acid%2C ZnSO(4)%2C and MgCl(2). Also regulates nitric oxide levels. TOUCH 2 (TCH2)%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: in 13 processes%3B LOCATED IN: plasma membrane%2C actin cytoskeleton%3B EXPRESSED IN: 34 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: calmodulin like 23 (TAIR:AT1G66400.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT3G03400 EF hand calcium-binding protein family EF hand calcium-binding protein family%3B FUNCTIONS IN: calcium ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: central cell%3B CONTAINS InterPro DOMAIN/s: EF-Hand 1%2C calcium-binding site (InterPro:IPR018247)%2C EF-HAND 2 (InterPro:IPR018249)%2C EF-hand-like domain (InterPro:IPR011992)%2C Calcium-binding EF-hand (InterPro:IPR002048)%2C EF-hand (InterPro:IPR018248)%3B BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G17470.1)%3B Has 13690 Blast hits to 10114 proteins in 1236 species: Archae - 0%3B Bacteria - 48%3B Metazoa - 5217%3B Fungi - 2887%3B Plants - 3646%3B Viruses - 0%3B Other Eukaryotes - 1892 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaB03g15271 ChrB03 + View
Brassica oleracea BolC6t39065H C6 - View
Beta vulgaris EL10Ac2g04468 PTHR10891//PTHR10891:SF605 - EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN // CALCIUM-BINDING PROTEIN CML25-RELATED Chr2_EL10_PGA_scaffold6 - View
Capsicum annuum CAN.G1061.42 PGAv.1.6.scaffold1061 - View
Corylus avellana Haze_14236 Similar to CML23: Probable calcium-binding protein CML23 (Arabidopsis thaliana OX%3D3702) 5 + View
Citrus clementina Ciclev10013012m.g scaffold_6 - View
Carpinus fangiana Cfa007829 Cfa03 - View
Cardamine hirsuta CARHR058370 calmodulin like 23 Chr2 - View
Cardamine hirsuta CARHR215040 calmodulin like 23 Chr7 + View
Carya illinoinensis CiPaw.03G070000 PTHR10891:SF605 - CALCIUM-BINDING PROTEIN CML25-RELATED Chr03 + View
Carya illinoinensis CiPaw.04G046500 PTHR10891//PTHR10891:SF605 - EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN // CALCIUM-BINDING PROTEIN CML25-RELATED Chr04 + View
Citrullus lanatus ClCG05G011200 calmodulin like 23 LENGTH=157 CG_Chr05 + View
Carica papaya Cpa.g.sc116.35 supercontig_116 + View
Chenopodium quinoa AUR62023225 CML18: Probable calcium-binding protein CML18 C_Quinoa_Scaffold_1352 - View
Chenopodium quinoa AUR62023178 CML18: Probable calcium-binding protein CML18 C_Quinoa_Scaffold_1189 - View
Capsella rubella Carub.0002s1245 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED scaffold_2 - View
Capsella rubella Carub.0007s3293 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED scaffold_7 - View
Daucus carota DCAR_010743 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_025869 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv19020 GWHABJS00000014 + View
Durio zibethinus Duzib133G0208 NW_019167938.1 - View
Erigeron canadensis ECA232G2608 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.J01551 Chr10 + View
Erythranthe guttata Migut.H00277 scaffold_8 + View
Eutrema salsugineum Thhalv10027972m.g PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED scaffold_14 + View
Eutrema salsugineum Thhalv10019556m.g PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED scaffold_9 - View
Fragaria x ananassa FAN28G1034 PTHR10891//PTHR10891:SF605 - EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN // CALCIUM-BINDING PROTEIN CML25-RELATED Fvb1-1 - View
Fragaria vesca FvH4_1g28870 PTHR10891:SF605 - CALCIUM-BINDING PROTEIN CML25-RELATED Fvb1 - View
Gossypium hirsutum Gohir.D07G082000 PTHR10891:SF605 - CALCIUM-BINDING PROTEIN CML25-RELATED D07 + View
Gossypium hirsutum Gohir.A07G077300 PTHR10891:SF605 - CALCIUM-BINDING PROTEIN CML25-RELATED A07 + View
Glycine max Glyma.11G217200 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED Gm11 - View
Gossypium raimondii Gorai.001G087100 Chr01 + View
Hydrangea macrophylla Hma1.2p1_0283F.1_g113440 Hma1.2p1_0283F.1 - View
Lupinus albus Lalb_Chr10g0104441 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED Lalb_Chr10 - View
Lotus japonicus Lj6g0006683 PTHR10891//PTHR10891:SF573 - EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN // CALCIUM-BINDING PROTEIN CML24-RELATED chr6 + View
Lotus japonicus LjContig00141g0002700 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED Contig00141 + View
Lonicera japonica Lj2P434T29 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_4_156941 PTHR10891:SF605 - CALCIUM-BINDING PROTEIN CML25-RELATED Lsat_1_v8_lg_4 - View
Malus domestica MD09G1262900 Calcium-binding EF-hand family protein Chr09 + View
Malus domestica MD17G1257900 Calcium-binding EF-hand family protein Chr17 + View
Manihot esculenta Manes.01G116700 Chromosome01 + View
Manihot esculenta Manes.02G075400 Chromosome02 + View
Medicago truncatula Medtr3g067610 EF hand calcium-binding family protein chr3 - View
Nelumbo nucifera Nn4g24202 chr4 + View
Nicotiana tabacum Nitab4.5_0002664g0030 EF-hand domain, EF-hand domain pair, EF-Hand 1, calcium-binding site Nitab4.5_0002664 - View
Olea europaea Oeu000914.1 scaffold1019 + View
Petunia axillaris Peaxi162Scf02113g00007 Calcium-binding EF-hand family protein Peaxi162Scf02113 - View
Punica granatum PGR042G0060 NC_045130.1 - View
Punica granatum PGR004G2686 NC_045131.1 - View
Prunus persica Prupe.3G160600 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED Pp03 + View
Pisum sativum Psat2g042000 EF-hand domain pair chr2LG1 + View
Papaver somniferum PSO017G4979 NC_039362.1 - View
Populus trichocarpa Potri.017G126200 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED Chr17 - View
Populus trichocarpa Potri.004G089400 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED Chr04 + View
Phaseolus vulgaris Phvul.001G231000 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED Chr01 - View
Quercus lobata QL11p003643 11 - View
Rosa chinensis RcHm_v2.0_Chr3g0493331 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim12G0138800 chr12 - View
Rhododendron simsii Rhsim10G0097600 chr10 + View
Rhododendron simsii Rhsim08G0087100 chr08 + View
Salvia bowleyana SalBow3G0213 GWHASIU00000006 - View
Salix brachista Sabra04G0060000 GWHAAZH00000004 + View
Salix brachista Sabra17G0105900 GWHAAZH00000017 - View
Simmondsia chinensis Sc10g0000740 GWHAASQ00000010 - View
Simmondsia chinensis Sc11g0008690 GWHAASQ00000011 + View
Solanum lycopersicum Solyc02g091500.1 Calcium-dependent protein kinase (AHRD V3.3 *-* CDPK_DAUCA) SL4.0ch02 + View
Schrenkiella parvula Sp7g04260 PTHR10891:SF573 - CALCIUM-BINDING PROTEIN CML24-RELATED ch7-1 - View
Schrenkiella parvula Sp5g21470 PTHR10891//PTHR10891:SF573 - EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN // CALCIUM-BINDING PROTEIN CML24-RELATED ch5-5 - View
Solanum pennellii Sopen02g036120 Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress | in regions undergoing growth | in vascular tissues and various floral organs | and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). Also regulates nitric oxide levels. | TOUCH 2 (TCH2) | FUNCTIONS IN: calcium ion binding | INVOLVED IN: in 13 processes | LOCATED IN: plasma membrane, actin cytoskeleton | EXPRESSED IN: 34 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site , EF-HAND 2 , EF-hand-like domain , Calcium-binding EF-hand , EF-hand | BEST Arabidopsis thaliana protein match is: calmodulin like 23 Spenn-ch02 + View
Solanum tuberosum PGSC0003DMG400030608 Calcium-binding protein CML24 ST4.03ch02 + View
Trochodendron aralioides TAR622G0250 group8 - View
Trochodendron aralioides TAR374G0850 group12 + View
Theobroma cacao Thecc.04G118900 Calmodulin like 23 Chromosome_4 - View
Tarenaya hassleriana THA.LOC104805610 calcium-binding protein CML24-like NW_010961290.1 + View
Tarenaya hassleriana THA.LOC104822372 calcium-binding protein CML24-like NW_010960187.1 - View
Trifolium pratense TPR.G3509 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI74G1313 NC_052234.1 + View
Vigna mungo VMungo0647G1008 CM024073.1 - View
Vigna mungo VMungo1383G3001 CM024070.1 - View