Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0003725 RING/U-box domain-containing protein isoform 1 [Theobroma cacao] Chr4 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G16510 LG-2 + View
Acer truncatum Atru.chr5.2641 chr5 - View
Actinidia chinensis Actinidia27962 Lachesis_group16 - View
Actinidia chinensis Actinidia00425 Lachesis_group12 + View
Actinidia chinensis Actinidia17877 Lachesis_group7 - View
Arabidopsis lyrata AL7G17290 scaffold_7 - View
Avicennia marina MSTRG.20171 ScioBoG_26180_HRSCAF_26306 + View
Amaranthus hybridus Ah.01g017910 AmaHy_arrow1_Scaffold_1 + View
Amaranthus hybridus Ah.01g010650 Probable E3 ubiquitin ligase SUD1 (EC 2.3.2.27) (Protein ECERIFERUM 9) (Protein SUPPRESSOR OF DRY2 DEFFECTS 1) (AtSUD1) (RING-type E3 ubiquitin transferase SUD1) (RING/U-box domain-containing protein) AmaHy_arrow1_Scaffold_1 + View
Aquilegia oxysepala Aqoxy6G01258 CHR06 - View
Aquilegia oxysepala Aqoxy5G01185 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.92SQ9J arahy.Tifrunner.gnm1.Arahy.20 + View
Arabidopsis thaliana AT4G34100 RING/U-box superfamily protein Encodes a protein involved in cuticular wax biosynthesis. Lines carrying a recessive mutation in this locus have reduced chain-length distribution%2C weakly glaucous stem surface%2C and has reduced fertility in early flowers%2C non-spreading floret%2C downward cupped leaves%2C leaf waxes nearly pure C24 and C26 acid. RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1)%3B Has 2169 Blast hits to 1906 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 966%3B Fungi - 273%3B Plants - 550%3B Viruses - 44%3B Other Eukaryotes - 336 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaNung03790 Contig1304 + View
Brassica carinata BcaC01g00933 ChrC01 - View
Brassica carinata BcaB03g11857 ChrB03 - View
Brassica napus C03p86110 C03 - View
Brassica napus A08p17150 A08 - View
Brassica napus C01p04750 C01 - View
Brassica oleracea BolC3t20899H C3 - View
Brassica rapa BraA08t33676Z A08 - View
Beta vulgaris EL10Ac9g22322 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Chr9_EL10_PGA_scaffold8 - View
Capsicum annuum CAN.G1231.31 PGAv.1.6.scaffold1231 - View
Cannabis sativa CANSAT01G1155 NC_044373.1 + View
Cannabis sativa CANSAT25G1275 NC_044370.1 + View
Cicer arietinum L. Ca_18711_v3 Ca_LG6_v3 + View
Corylus avellana Haze_10112 Similar to SUD1: Probable E3 ubiquitin ligase SUD1 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc02_g19010 Putative E3 ubiquitin-protein ligase MARCH6 chr2 + View
Citrus clementina Ciclev10027715m.g scaffold_8 - View
Carpinus fangiana Cfa004547 Cfa02 + View
Cardamine hirsuta CARHR242210 E3 ubiquitin-protein ligase MARCH6 Chr7 + View
Carya illinoinensis CiPaw.05G008400 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Chr05 + View
Carya illinoinensis CiPaw.06G171300 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Chr06 - View
Citrullus lanatus ClCG02G006070 E3 ubiquitin-protein ligase MARCH6 CG_Chr02 + View
Cucumis melo MELO3C018461.2 E3 ubiquitin-protein ligase MARCH6 chr01 + View
Corchorus olitorius COL.COLO4_32627 Zinc finger%2C RING-CH-type AWUE01021138.1 - View
Carica papaya Cpa.g.sc200.25 supercontig_200 - View
Chenopodium quinoa AUR62013236 SUD1: Probable E3 ubiquitin ligase SUD1 C_Quinoa_Scaffold_1040 + View
Chenopodium quinoa AUR62010254 SUD1: Probable E3 ubiquitin ligase SUD1 C_Quinoa_Scaffold_1257 + View
Capsella rubella Carub.0007s0632 scaffold_7 - View
Cucumis sativus L. CsaV3_7G008470 E3 ubiquitin-protein ligase MARCH6 chr7 - View
Daucus carota DCAR_022010 hypothetical protein DCARv2_Chr6 + View
Daucus carota DCAR_029075 hypothetical protein DCARv2_Chr9 + View
Davidia involucrata Dinv15736 GWHABJS00000005 + View
Davidia involucrata Dinv42173 GWHABJS00000002 - View
Durio zibethinus Duzib132G0131 NW_019167915.1 + View
Durio zibethinus Duzib248G1549 NW_019168048.1 - View
Durio zibethinus Duzib052G0365 NW_019167849.1 - View
Erigeron canadensis ECA236G4146 Conyza_canadensis_scaffold:3 - View
Erigeron canadensis ECA234G3000 Conyza_canadensis_scaffold:4 - View
Eucalyptus grandis Eucgr.I01130 Chr09 - View
Erythranthe guttata Migut.B00367 scaffold_2 + View
Eutrema salsugineum Thhalv10024280m.g K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) scaffold_1 - View
Fragaria x ananassa FAN20G0068 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Fvb2-3 + View
Fragaria x ananassa FAN15G2265 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Fvb2-4 - View
Fragaria x ananassa FAN24G2894 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Fvb2-2 + View
Fragaria x ananassa FAN27G3397 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Fvb2-1 - View
Fragaria vesca FvH4_2g05730 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Fvb2 - View
Gossypium hirsutum Gohir.A13G042500 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) A13 + View
Gossypium hirsutum Gohir.D13G040900 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) D13 + View
Gossypium hirsutum Gohir.D02G208600 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) D02 - View
Gossypium hirsutum Gohir.A03G187800 KOG1609 - Protein involved in mRNA turnover and stability A03 - View
Glycine max Glyma.02G103800 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Gm02 + View
Glycine max Glyma.07G215200 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Gm07 + View
Gossypium raimondii Gorai.005G236600 Chr05 - View
Gossypium raimondii Gorai.013G045900 Chr13 + View
Lupinus albus Lalb_Chr05g0219311 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Lalb_Chr05 + View
Lupinus albus Lalb_Chr16g0384861 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Lalb_Chr16 + View
Lotus japonicus Lj4g0010035 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) chr4 - View
Lonicera japonica Lj9A355T76 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_5_115740 Lsat_1_v8_lg_5 - View
Lactuca sativa Lsat_1_v5_gn_0_4161 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Lsat_1_v8_lg_7 - View
Malus domestica MD05G1085000 RING/U-box superfamily protein Chr05 + View
Manihot esculenta Manes.07G072800 Chromosome07 + View
Medicago truncatula Medtr4g085550 RING/U-box protein chr4 - View
Nelumbo nucifera Nn1g04785 chr1 - View
Nelumbo nucifera Nn5g30358 chr5 + View
Olea europaea Oeu010384.1 chr15 + View
Petunia axillaris Peaxi162Scf00016g00211 E3 ubiquitin-protein ligase MARCH6 Peaxi162Scf00016 + View
Punica granatum PGR142G0507 NC_045128.1 - View
Prunus persica Prupe.8G129300 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Pp08 + View
Pisum sativum Psat7g126400 RING-variant domain chr7LG7 + View
Papaver somniferum PSO541G0156 NC_039363.1 + View
Papaver somniferum PSO675G7634 NC_039358.1 + View
Papaver somniferum PSO210G1934 NC_039359.1 + View
Papaver somniferum PSO675G4888 NC_039358.1 + View
Papaver somniferum PSO170G0111 NC_039360.1 + View
Populus trichocarpa Potri.001G304100 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Chr01 - View
Populus trichocarpa Potri.009G099400 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Chr09 - View
Phaseolus vulgaris Phvul.003G047600 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) Chr03 - View
Quercus lobata QL11p034831 11 - View
Rosa chinensis RcHm_v2.0_Chr6g0256621 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim05G0086900 chr05 + View
Rhododendron simsii Rhsim11G0163900 chr11 - View
Striga asiatica SGA_v2.0_scaffold90G27611 scaffold90 - View
Salvia bowleyana SalBow6G6213 GWHASIU00000002 + View
Salix brachista Sabra09G0075700 GWHAAZH00000009 - View
Salix brachista Sabra16G0190800 GWHAAZH00000016 - View
Sechium edule Sed0022765 LG10 - View
Sechium edule Sed0014443 LG05 + View
Solanum lycopersicum Solyc01g107880.3 Zinc finger, RING-CH-type, Zinc finger, RING/FYVE/PHD-type (AHRD V3.3 *** A0A2U1NZJ9_ARTAN) SL4.0ch01 - View
Schrenkiella parvula Sp7g31810 K10661 - E3 ubiquitin-protein ligase MARCH6 (MARCH6, DOA10) ch7-5 + View
Solanum pennellii Sopen01g050050 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | LOCATED IN: chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type , Zinc finger, RING-CH-type | BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400025880 Protein binding / zinc ion binding ST4.03ch01 - View
Selenicereus undatus Hund00120 Scaffold_33678 + View
Selenicereus undatus Hund06339 Scaffold_33676 - View
Trochodendron aralioides TAR628G0580 group5 + View
Trochodendron aralioides TAR381G0095 group11 + View
Theobroma cacao Thecc.02G103800 RING/U-box superfamily protein Chromosome_2 + View
Tarenaya hassleriana THA.LOC104807837 probable E3 ubiquitin ligase SUD1 NW_010963495.1 - View
Tarenaya hassleriana THA.LOC104827264 probable E3 ubiquitin ligase SUD1 isoform X3 NW_010960188.1 + View
Trifolium pratense TPR.G12707 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI79G1465 NC_052238.1 - View
Tripterygium wilfordii TWI75G1110 NC_052253.1 + View
Tripterygium wilfordii TWI31G1427 NC_052233.1 - View
Vaccinium macrocarpon vmacro02027 Similar to SUD1: Probable E3 ubiquitin ligase SUD1 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro19516 Similar to SUD1: Probable E3 ubiquitin ligase SUD1 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01022083001 chr7 - View
Vitis vinifera GSVIVG01031710001 chr3 - View