Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0009677 PREDICTED: probable polygalacturonase [Vitis vinifera] Chr9 - View
CSS0007161 PREDICTED: probable polygalacturonase isoform X1 [Nicotiana sylvestris] Chr13 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G3910 LG-8 + View
Acer truncatum Atru.chr4.2926 chr4 + View
Acer truncatum Atru.chr5.1083 chr5 - View
Actinidia chinensis Actinidia13379 Lachesis_group10 - View
Actinidia chinensis Actinidia25824 Lachesis_group15 + View
Actinidia chinensis Actinidia21023 Lachesis_group9 + View
Arabidopsis lyrata AL8G22830 scaffold_8 + View
Avicennia marina MSTRG.21656 ScioBoG_26769_HRSCAF_26899 + View
Avicennia marina MSTRG.18132 ScioBoG_22153_HRSCAF_22259 - View
Aquilegia oxysepala Aqoxy2G02862 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.P2PL73 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.BS7E4V PTHR31339//PTHR31339:SF15 - FAMILY NOT NAMED // PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QJW53T PTHR31339//PTHR31339:SF15 - FAMILY NOT NAMED // PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.14 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IU4ZUA PTHR31339//PTHR31339:SF15 - FAMILY NOT NAMED // PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.U9RBLI PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) arahy.Tifrunner.gnm1.Arahy.16 + View
Arabidopsis thaliana AT5G49215 Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Pectin lyase fold (InterPro:IPR012334)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0693G359 AmTr_v1.0_scaffold00003 - View
Brassica carinata BcaB07g34142 ChrB07 + View
Brassica carinata BcaNung02590 Contig906 + View
Brassica carinata BcaC03g17708 ChrC03 + View
Brassica carinata BcaB01g00741 ChrB01 + View
Brassica carinata BcaC06g30706 ChrC06 - View
Brassica napus A02p37950 A02 + View
Brassica napus A06p38490 A06 - View
Brassica napus C02p57140 C02 + View
Capsicum annuum CAN.G1280.14 PGAv.1.6.scaffold1280 + View
Capsicum annuum CAN.G862.59 PGAv.1.6.scaffold862 - View
Corylus avellana Haze_04983 Similar to GSVIVT00026920001: Probable polygalacturonase (Vitis vinifera OX%3D29760) 2 + View
Coffea canephora Cc01_g21140 Putative Probable polygalacturonase chr1 + View
Citrus clementina Ciclev10004942m.g scaffold_9 - View
Ceratophyllum demersum CDE02G2429 1 - View
Ceratophyllum demersum CDE08G0771 6 + View
Carpinus fangiana Cfa005864 Cfa02 - View
Cardamine hirsuta CARHR172450 Pectin lyase-like superfamily protein Chr5 - View
Cardamine hirsuta CARHR182450 Pectin lyase-like superfamily protein Chr6 - View
Carya illinoinensis CiPaw.01G144300 PTHR31339//PTHR31339:SF15 - FAMILY NOT NAMED // PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Chr01 - View
Carya illinoinensis CiPaw.07G112800 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Chr07 + View
Citrullus lanatus ClCG05G006310 Pectin lyase-like superfamily protein LENGTH=446 CG_Chr05 + View
Cucumis melo MELO3C006690.2 Pectin lyase-like superfamily protein chr06 + View
Carica papaya Cpa.g.sc9.114 supercontig_9 - View
Carica papaya Cpa.g.sc151.35 supercontig_151 + View
Chenopodium quinoa AUR62016162 GSVIVT00026920001: Probable polygalacturonase C_Quinoa_Scaffold_3256 - View
Cucumis sativus L. CsaV3_3G014940 Pectin lyase-like superfamily protein chr3 + View
Daucus carota DCAR_005782 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_002863 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv44339 GWHABJS00000014 + View
Davidia involucrata Dinv33080 GWHABJS00000010 + View
Durio zibethinus Duzib052G0470 NW_019167849.1 + View
Durio zibethinus Duzib151G1090 NW_019167904.1 + View
Erigeron canadensis ECA236G1280 Conyza_canadensis_scaffold:3 + View
Erythranthe guttata Migut.D00122 scaffold_4 - View
Fragaria x ananassa FAN12G0075 PTHR31339//PTHR31339:SF15 - FAMILY NOT NAMED // PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Fvb4-3 - View
Fragaria x ananassa FAN07G0962 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Fvb4-4 - View
Fragaria x ananassa FAN27G1024 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Fvb2-1 + View
Fragaria x ananassa FAN20G2452 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Fvb2-3 + View
Fragaria x ananassa FAN24G1289 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Fvb2-2 - View
Fragaria vesca FvH4_2g26150 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Fvb2 + View
Fragaria vesca FvH4_4g18930 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Fvb4 + View
Gossypium hirsutum Gohir.D09G237100 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED D09 - View
Gossypium hirsutum Gohir.A09G236300 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED A09 - View
Gossypium hirsutum Gohir.D10G173700 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED D10 + View
Gossypium hirsutum Gohir.A10G167600 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED A10 + View
Glycine max Glyma.17G029700 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Gm17 + View
Glycine max Glyma.07G244200 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Gm07 - View
Glycine max Glyma.19G213400 PF00295//PF12708 - Glycosyl hydrolases family 28 (Glyco_hydro_28) // Pectate lyase superfamily protein (Pectate_lyase_3) Gm19 + View
Glycine max Glyma.10G016100 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Gm10 - View
Glycine max Glyma.03G216800 PF00295//PF12708 - Glycosyl hydrolases family 28 (Glyco_hydro_28) // Pectate lyase superfamily protein (Pectate_lyase_3) Gm03 + View
Glycine max Glyma.09G041000 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Gm09 - View
Glycine max Glyma.02G015600 PF00295//PF12708 - Glycosyl hydrolases family 28 (Glyco_hydro_28) // Pectate lyase superfamily protein (Pectate_lyase_3) Gm02 - View
Gossypium raimondii Gorai.011G194200 Chr11 + View
Gossypium raimondii Gorai.006G260100 Chr06 - View
Helianthus annuus HanXRQChr04g0114711 Probable pectin lyase-like superfamily protein HanXRQChr04 - View
Hydrangea macrophylla Hma1.2p1_0494F.1_g165500 Hma1.2p1_0494F.1 + View
Lupinus albus Lalb_Chr20g0121111 PTHR31339//PTHR31339:SF15 - FAMILY NOT NAMED // PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Lalb_Chr20 - View
Lupinus albus Lalb_Chr21g0309361 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Lalb_Chr21 + View
Lotus japonicus Lj4g0023705 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED chr4 + View
Lotus japonicus Lj6g0025491 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED chr6 + View
Lotus japonicus Lj5g0021105 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) chr5 + View
Lonicera japonica Lj1A21T75 GWHAAZE00000001 - View
Lonicera japonica Lj2A1200T70 GWHAAZE00000002 + View
Lonicera japonica Lj6A683G49 GWHAAZE00000006 + View
Lactuca sativa Lsat_1_v5_gn_8_164660 Lsat_1_v8_lg_8 - View
Magnolia biondii MBI19_g08253_MAGBIO AED:0.10 Chr19 - View
Malus domestica MD16G1161800 Pectin lyase-like superfamily protein Chr16 - View
Malus domestica MD13G1162000 Pectin lyase-like superfamily protein Chr13 - View
Malus domestica MD03G1292400 Pectin lyase-like superfamily protein Chr03 + View
Manihot esculenta Manes.03G200200 Chromosome03 + View
Manihot esculenta Manes.15G009000 Chromosome15 - View
Medicago truncatula Medtr4g120730 polygalacturonase/glycoside hydrolase family protein chr4 + View
Nelumbo nucifera Nn3g21578 chr3 + View
Nicotiana tabacum Nitab4.5_0000116g0280 Parallel beta-helix repeat, Glycoside hydrolase, family 28, Pectin lyase fold, Pectin lyase fold/virulence factor Nitab4.5_0000116 - View
Nicotiana tabacum Nitab4.5_0001544g0090 Pectin lyase fold, Parallel beta-helix repeat, Pectin lyase fold/virulence factor, Glycoside hydrolase, family 28 Nitab4.5_0001544 + View
Nicotiana tabacum Nitab4.5_0005587g0030 Pectin lyase fold, Parallel beta-helix repeat, Pectin lyase fold/virulence factor, Glycoside hydrolase, family 28 Nitab4.5_0005587 + View
Olea europaea Oeu054110.2 chr20 + View
Olea europaea Oeu011472.1 scaffold1435 + View
Olea europaea Oeu006451.1 scaffold1235 + View
Olea europaea Oeu017664.1 chr11 - View
Oryza sativa ssp. japonica Os12g0554800 Similar to Polygalacturonase-like protein. chr12 + View
Petunia axillaris Peaxi162Scf00147g00710 Pectin lyase-like superfamily protein Peaxi162Scf00147 + View
Petunia axillaris Peaxi162Scf00001g00333 Pectin lyase-like superfamily protein Peaxi162Scf00001 - View
Punica granatum PGR031G0167 NC_045127.1 + View
Prunus persica Prupe.8G265400 Pp08 + View
Prunus persica Prupe.1G129300 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Pp01 - View
Papaver somniferum PSO210G5642 NC_039359.1 - View
Populus trichocarpa Potri.010G005500 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Chr10 + View
Phaseolus vulgaris Phvul.001G210300 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Chr01 + View
Phaseolus vulgaris Phvul.007G217500 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Chr07 - View
Phaseolus vulgaris Phvul.009G252200 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Chr09 + View
Quercus lobata QL06p010918 6 + View
Rosa chinensis RcHm_v2.0_Chr6g0294531 RcHm_v2.0_Chr6 + View
Rosa chinensis RcHm_v2.0_Chr4g0423821 RcHm_v2.0_Chr4 + View
Striga asiatica SGA_v2.0_scaffold334G49030 scaffold334 + View
Striga asiatica SGA_v2.0_scaffold2G01378 scaffold2 - View
Salvia bowleyana SalBow2G2511 GWHASIU00000007 + View
Salvia bowleyana SalBow6G5331 GWHASIU00000002 + View
Sechium edule Sed0011718 LG02 - View
Sechium edule Sed0000860 LG12 - View
Solanum lycopersicum Solyc06g009790.4 Pectin lyase-like superfamily protein (AHRD V3.3 *** A0A2U1PV10_ARTAN) SL4.0ch06 - View
Solanum lycopersicum Solyc09g075460.3 Pectin lyase-like superfamily protein (AHRD V3.3 *** A0A2U1PV10_ARTAN) SL4.0ch09 + View
Schrenkiella parvula Sp2g19590 PTHR31339:SF15 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED ch2-4 + View
Solanum pennellii Sopen09g030250 Pectin lyase-like superfamily protein | FUNCTIONS IN: polygalacturonase activity | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: vacuole, plant-type cell wall | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor , Glycoside hydrolase, family 28 , Pectin lyase fold , Parallel beta-helix repeat | BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein Spenn-ch09 + View
Solanum pennellii Sopen06g004420 Pectin lyase-like superfamily protein | FUNCTIONS IN: polygalacturonase activity | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: vacuole, plant-type cell wall | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor , Glycoside hydrolase, family 28 , Pectin lyase fold , Parallel beta-helix repeat | BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400031797 Polygalacturonase ST4.03ch09 + View
Solanum tuberosum PGSC0003DMG400007306 Polygalacturonase ST4.03ch06 + View
Selenicereus undatus Hund03090 Scaffold_19641 + View
Trochodendron aralioides TAR365G0566 group16 - View
Trochodendron aralioides TAR362G0293 group17 - View
Trochodendron aralioides TAR633G0163 group2 + View
Theobroma cacao Thecc.04G291200 Chromosome_4 + View
Tarenaya hassleriana THA.LOC104820281 probable polygalacturonase NW_010966178.1 - View
Tarenaya hassleriana THA.LOC104827080 probable polygalacturonase NW_010967707.1 + View
Tripterygium wilfordii TWI53G0766 NC_052244.1 + View
Tripterygium wilfordii TWI23G1085 NC_052239.1 - View
Tripterygium wilfordii TWI73G1157 NC_052232.1 - View
Tripterygium wilfordii TWI14G0515 NC_052249.1 - View
Utricularia gibba unitig_26.g10180 unitig_26 + View
Utricularia gibba unitig_22.g5231 unitig_22 - View
Vaccinium macrocarpon vmacro15134 Similar to GSVIVT00026920001: Probable polygalacturonase (Vitis vinifera OX%3D29760) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G3458 CM024074.1 - View
Vigna mungo VMungo1383G0238 CM024070.1 + View
Vigna mungo VMungo1309G2379 CM024072.1 - View
Vigna mungo VMungo0720G2891 CM024071.1 + View
Vitis vinifera GSVIVG01035089001 chr5 - View
Vitis vinifera GSVIVG01028057001 chr7 + View