Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0038375 PREDICTED: uncharacterized protein LOC102594483 isoform X1 [Solanum tuberosum] Chr1 - View
CSS0021370 unnamed protein product [Coffea canephora] Chr6 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG9G16600 LG-9 + View
Aethionema arabicum Aa31LG2G4000 LG-2 - View
Aethionema arabicum Aa31LG4G11540 LG-4 + View
Acer truncatum Atru.chr8.387 chr8 - View
Actinidia chinensis Actinidia09240 Lachesis_group13 + View
Actinidia chinensis Actinidia33245 Lachesis_group12 - View
Actinidia chinensis Actinidia01974 Lachesis_group11 + View
Actinidia chinensis Actinidia32288 Lachesis_group4 - View
Actinidia chinensis Actinidia04851 Lachesis_group1 + View
Arabidopsis lyrata AL5G19260 scaffold_5 + View
Arabidopsis lyrata AL2G28440 scaffold_2 - View
Avicennia marina MSTRG.15460 ScioBoG_19538_HRSCAF_19626 - View
Avicennia marina MSTRG.23903 ScioBoG_3895_HRSCAF_3912 - View
Avicennia marina MSTRG.3022 ScioBoG_102835_HRSCAF_103059 - View
Amaranthus hybridus Ah.02g113860 AmaHy_arrow1_Scaffold_2 + View
Aquilegia oxysepala Aqoxy3G03561 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.2KIY95 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.10 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5U46LK PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.20 + View
Arabidopsis thaliana AT1G69330 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2)%3B Has 288 Blast hits to 287 proteins in 41 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 134%3B Fungi - 0%3B Plants - 144%3B Viruses - 0%3B Other Eukaryotes - 10 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT3G29270 RING/U-box superfamily protein RING/U-box superfamily protein%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G69330.1)%3B Has 253 Blast hits to 253 proteins in 43 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 108%3B Fungi - 2%3B Plants - 132%3B Viruses - 0%3B Other Eukaryotes - 11 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0111G018 AmTr_v1.0_scaffold00177 + View
Brassica carinata BcaB07g30089 ChrB07 - View
Brassica carinata BcaC06g33683 ChrC06 + View
Brassica napus C02p55450 C02 + View
Brassica napus A06p40020 A06 - View
Brassica napus A02p36490 A02 + View
Brassica napus A07p35640 A07 - View
Brassica napus C07p38150 C07 + View
Brassica oleracea BolC6t39373H C6 - View
Brassica oleracea BolC7t44337H C7 + View
Brassica oleracea BolC2t11601H C2 + View
Brassica rapa BraA07t31152Z A07 - View
Brassica rapa BraA02t08644Z A02 + View
Brassica rapa BraA06t26917Z A06 - View
Capsicum annuum CAN.G206.198 PGAv.1.6.scaffold206 + View
Cannabis sativa CANSAT64G2065 NC_044379.1 - View
Cicer arietinum L. Ca_04867_v3 Ca_LG2_v3 + View
Coffea canephora Cc07_g03880 RING/U-box superfamily protein chr7 + View
Coffea canephora Cc11_g12320 RING/U-box superfamily protein chr11 - View
Citrus clementina Ciclev10020924m.g scaffold_3 + View
Citrus clementina Ciclev10012457m.g scaffold_6 - View
Carpinus fangiana Cfa007623 Cfa03 + View
Carpinus fangiana Cfa008901 Cfa03 - View
Cardamine hirsuta CARHR153960 RING zinc finger protein-like Chr5 + View
Cardamine hirsuta CARHR062220 RING zinc finger protein-like Chr2 - View
Carya illinoinensis CiPaw.03G091500 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr03 - View
Carya illinoinensis CiPaw.04G058600 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr04 - View
Carya illinoinensis CiPaw.05G127500 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr05 - View
Carica papaya Cpa.g.sc14.143 supercontig_14 + View
Carica papaya Cpa.g.sc1.98 supercontig_1 + View
Chenopodium quinoa AUR62008484 Protein of unknown function C_Quinoa_Scaffold_3422 + View
Chenopodium quinoa AUR62007949 Protein of unknown function C_Quinoa_Scaffold_2646 - View
Capsella rubella Carub.0005s0797 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED scaffold_5 + View
Capsella rubella Carub.0002s1593 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED scaffold_2 - View
Daucus carota DCAR_025406 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv34118 GWHABJS00000008 + View
Davidia involucrata Dinv16708 GWHABJS00000018 + View
Davidia involucrata Dinv11488 GWHABJS00000012 - View
Davidia involucrata Dinv33809 GWHABJS00000014 + View
Davidia involucrata Dinv10679 GWHABJS00000006 - View
Davidia involucrata Dinv38765 GWHABJS00000019 - View
Durio zibethinus Duzib268G1475 NW_019168270.1 - View
Durio zibethinus Duzib264G0753 NW_019167960.1 + View
Durio zibethinus Duzib251G0087 NW_019167971.1 - View
Durio zibethinus Duzib187G0703 NW_019167860.1 + View
Durio zibethinus Duzib147G1625 NW_019168470.1 - View
Erigeron canadensis ECA247G1424 Conyza_canadensis_scaffold:7 + View
Erigeron canadensis ECA232G1491 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA238G2192 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.B03176 Chr02 - View
Erythranthe guttata Migut.H00654 scaffold_8 - View
Erythranthe guttata Migut.L01215 scaffold_12 - View
Erythranthe guttata Migut.K01294 scaffold_11 - View
Eutrema salsugineum Thhalv10019012m.g PTHR13139 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN scaffold_9 + View
Eutrema salsugineum Thhalv10005526m.g PTHR13139 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN scaffold_6 - View
Fragaria x ananassa FAN12G3704 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Fvb4-3 + View
Fragaria x ananassa FAN22G0495 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Fvb4-1 - View
Fragaria x ananassa FAN17G2654 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Fvb4-2 + View
Fragaria x ananassa FAN07G0344 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Fvb4-4 + View
Fragaria vesca FvH4_6g47511 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Fvb6 - View
Fragaria vesca FvH4_4g30433 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Fvb4 - View
Gossypium hirsutum Gohir.D11G075500 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED D11 + View
Gossypium hirsutum Gohir.D13G080000 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED D13 + View
Gossypium hirsutum Gohir.A13G080200 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED A13 - View
Gossypium hirsutum Gohir.A05G370300 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED A05 + View
Gossypium hirsutum Gohir.A11G071500 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED A11 + View
Gossypium hirsutum Gohir.D04G045200 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED D04 - View
Gossypium hirsutum Gohir.A09G011700 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED A09 - View
Gossypium hirsutum Gohir.D09G010700 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED D09 - View
Glycine max Glyma.01G055900 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm01 + View
Glycine max Glyma.02G114200 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm02 + View
Glycine max Glyma.08G241700 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm08 + View
Glycine max Glyma.18G264000 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm18 + View
Glycine max Glyma.19G027300 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm19 + View
Glycine max Glyma.13G059100 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Gm13 - View
Gossypium raimondii Gorai.013G091600 Chr13 + View
Gossypium raimondii Gorai.012G050400 Chr12 - View
Gossypium raimondii Gorai.007G081200 Chr07 + View
Gossypium raimondii Gorai.006G012300 Chr06 - View
Helianthus annuus HanXRQChr07g0199491 Putative zinc finger, RING/FYVE/PHD-type; RING-type zinc-finger, LisH dimerisation motif HanXRQChr07 - View
Lupinus albus Lalb_Chr10g0093211 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Lalb_Chr10 - View
Lupinus albus Lalb_Chr02g0159061 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Lalb_Chr02 - View
Lupinus albus Lalb_Chr10g0098611 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Lalb_Chr10 + View
Lupinus albus Lalb_Chr06g0175121 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Lalb_Chr06 - View
Lotus japonicus Lj1g0027565 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED chr1 - View
Lotus japonicus Lj2g0024015 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED chr2 + View
Lotus japonicus Lj2g0009004 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED chr2 - View
Lonicera japonica Lju41C7T2 GWHAAZE00000094 - View
Lonicera japonica Lj5C106T14 GWHAAZE00000005 - View
Lonicera japonica Lj6P782T98 GWHAAZE00000006 - View
Lactuca sativa Lsat_1_v5_gn_2_87941 Lsat_1_v8_lg_2 + View
Lactuca sativa Lsat_1_v5_gn_1_13801 PTHR13139 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN Lsat_1_v8_lg_1 + View
Malus domestica MD16G1064000 RING/U-box superfamily protein Chr16 - View
Malus domestica MD17G1056500 RING/U-box superfamily protein Chr17 + View
Malus domestica MD09G1061100 RING/U-box superfamily protein Chr09 + View
Malus domestica MD13G1065500 RING/U-box superfamily protein Chr13 - View
Manihot esculenta Manes.14G083000 Chromosome14 + View
Manihot esculenta Manes.02G051200 Chromosome02 + View
Manihot esculenta Manes.01G099200 Chromosome01 - View
Medicago truncatula Medtr5g043680 zinc finger, C3HC4 type (RING finger) protein chr5 + View
Medicago truncatula Medtr6g013720 zinc finger, C3HC4 type (RING finger) protein chr6 + View
Nicotiana tabacum Nitab4.5_0000720g0020 Zinc finger, RING-type, conserved site, RING-type zinc-finger, LisH dimerisation motif, Zinc finger, RING/FYVE/PHD-type, Zinc finger, RING-type Nitab4.5_0000720 - View
Nicotiana tabacum Nitab4.5_0000565g0090 Zinc finger, RING-type, Zinc finger, RING-type, conserved site, RING-type zinc-finger, LisH dimerisation motif, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0000565 + View
Olea europaea Oeu010236.1 chr18 + View
Olea europaea Oeu016227.1 chr6 - View
Olea europaea Oeu062144.1 chr10 + View
Petunia axillaris Peaxi162Scf00166g00072 RING/U-box superfamily protein Peaxi162Scf00166 - View
Prunus persica Prupe.3G259000 Pp03 - View
Prunus persica Prupe.1G282600 PTHR13139 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN Pp01 + View
Papaver somniferum PSO478G3275 NC_039361.1 - View
Papaver somniferum PSO017G0919 NC_039362.1 + View
Populus trichocarpa Potri.017G090000 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr17 + View
Populus trichocarpa Potri.010G161100 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr10 - View
Populus trichocarpa Potri.004G125400 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr04 - View
Phaseolus vulgaris Phvul.004G033200 Chr04 + View
Phaseolus vulgaris Phvul.008G036100 Chr08 - View
Quercus lobata QL03p071026 3 + View
Quercus lobata QL02p039471 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr4g0438761 RcHm_v2.0_Chr4 - View
Rosa chinensis RcHm_v2.0_Chr2g0166551 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim08G0073500 chr08 + View
Striga asiatica SGA_v2.0_scaffold16G07763 scaffold16 + View
Salvia bowleyana SalBow1G4512 GWHASIU00000001 + View
Salix brachista Sabra17G0079100 GWHAAZH00000017 + View
Salix brachista Sabra10G0122500 GWHAAZH00000010 - View
Simmondsia chinensis Sc04g0002980 GWHAASQ00000004 + View
Simmondsia chinensis Sc11g0002300 GWHAASQ00000011 + View
Simmondsia chinensis Sc10g0003300 GWHAASQ00000010 - View
Solanum lycopersicum Solyc05g012560.3 ripening regulated protein (DDTFR7) SL4.0ch05 - View
Solanum lycopersicum Solyc02g088570.2 RING/U-box superfamily protein (AHRD V3.3 *** A0A2K3MXG0_TRIPR) SL4.0ch02 + View
Schrenkiella parvula Sp2g17850 PTHR13139//PTHR13139:SF47 - RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED ch2-4 + View
Solanum pennellii Sopen02g033290 RING/U-box superfamily protein | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch02 + View
Solanum pennellii Sopen05g007390 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch05 - View
Solanum tuberosum PGSC0003DMG400001351 Ubiquitin-protein ligase ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400028383 Ubiquitin-protein ligase ST4.03ch05 + View
Selenicereus undatus Hund25196 Scaffold_3410 - View
Trochodendron aralioides TAR629G1129 group0 - View
Trochodendron aralioides TAR371G0603 group13 + View
Trochodendron aralioides TAR374G1614 group12 - View
Theobroma cacao Thecc.02G335400 Chromosome_2 - View
Theobroma cacao Thecc.03G096000 Chromosome_3 + View
Theobroma cacao Thecc.04G090700 RING/U-box superfamily protein Chromosome_4 + View
Tarenaya hassleriana THA.LOC104805495 uncharacterized protein LOC104805495 NW_010961290.1 + View
Trifolium pratense TPR.G26181 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI34G2033 NC_052235.1 - View
Tripterygium wilfordii TWI32G1146 NC_052254.1 + View
Tripterygium wilfordii TWI60G0384 NC_052246.1 + View
Utricularia gibba unitig_748.g8432 unitig_748 - View
Vaccinium macrocarpon vmacro05666 Protein of unknown function chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G3129 CM024070.1 - View
Vigna mungo VMungo1215G3074 CM024074.1 + View
Vitis vinifera GSVIVG01007932001 chr17 + View
Vitis vinifera GSVIVG01011489001 chr14 + View
Zea mays Zm00001eb400420 Zm00001e038742 Putative RING zinc finger domain superfamily protein RING/U-box superfamily protein 9 - View