Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G21580 LG-2 - View
Aethionema arabicum Aa31LG8G17110 LG-8 - View
Acer truncatum Atru.chr5.1930 chr5 + View
Actinidia chinensis Actinidia23742 Lachesis_group9 - View
Actinidia chinensis Actinidia09499 Lachesis_group15 - View
Actinidia chinensis Actinidia30102 Lachesis_group24 + View
Arabidopsis lyrata AL7G23680 scaffold_7 - View
Arabidopsis lyrata AL3G47910 scaffold_3 + View
Avicennia marina MSTRG.12504 ScioBoG_17730_HRSCAF_17811 - View
Amaranthus hybridus Ah.08g214220 Transcription factor PIF1 (Basic helix-loop-helix protein 15) (AtbHLH15) (bHLH 15) (Protein PHY-INTERACTING FACTOR 1) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) (Transcription factor EN 101) (bHLH transcription factor bHLH015) AmaHy_arrow1_Scaffold_8 - View
Aquilegia oxysepala Aqoxy2G03834 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HTR7RG PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L83CB9 arahy.Tifrunner.gnm1.Arahy.02 - View
Arabidopsis thaliana AT4G28790 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G28800.1)%3B Has 3233 Blast hits to 3214 proteins in 170 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 50%3B Fungi - 65%3B Plants - 3113%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaC06g36695 ChrC06 - View
Brassica napus C01p10650 C01 - View
Brassica napus A07p00550 A07 + View
Brassica napus A01p09100 A01 - View
Brassica napus C07p01000 C07 + View
Brassica oleracea BolC7t40537H C7 + View
Brassica oleracea BolC1t01027H C1 - View
Brassica rapa BraA01t00858Z A01 - View
Beta vulgaris EL10Ac7g17818 PTHR12565//PTHR12565:SF108 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF1 Chr7_EL10_PGA_scaffold5 - View
Cannabis sativa CANSAT01G2597 NC_044373.1 + View
Cicer arietinum L. Ca_08772_v3 Ca_LG3_v3 + View
Cicer arietinum L. Ca_09623_v3 Ca_LG4_v3 - View
Corylus avellana Haze_24752 Similar to PIF1: Transcription factor PIF1 (Arabidopsis thaliana OX%3D3702) 8 + View
Coffea canephora Cc01_g17430 Putative Transcription factor PIF1 chr1 - View
Citrus clementina Ciclev10019585m.g scaffold_3 - View
Cardamine hirsuta CARHR236580 Transcription factor EB Chr7 + View
Cardamine hirsuta CARHR110680 Transcription factor Chr3 - View
Carya illinoinensis CiPaw.03G153000 Chr03 - View
Carya illinoinensis CiPaw.04G108300 PTHR12565:SF108 - TRANSCRIPTION FACTOR PIF1 Chr04 - View
Citrullus lanatus ClCG07G001610 PHYTOCHROME INTERACTING FACTOR 3-LIKE 5 family protein CG_Chr07 + View
Citrullus lanatus ClCG09G009390 BHLH transcription factor CG_Chr09 - View
Cucumis melo MELO3C012808.2 transcription factor PIF1-like isoform X1 chr04 - View
Cucumis melo MELO3C024155.2 transcription factor PIF1 chr01 - View
Carica papaya Cpa.g.sc8.199 supercontig_8 - View
Chenopodium quinoa AUR62031810 PIF1: Transcription factor PIF1 C_Quinoa_Scaffold_1895 + View
Chenopodium quinoa AUR62008898 PIF1: Transcription factor PIF1 C_Quinoa_Scaffold_1710 - View
Capsella rubella Carub.0007s1183 PTHR12565:SF145 - TRANSCRIPTION FACTOR BHLH119-RELATED scaffold_7 - View
Capsella rubella Carub.0003s3448 PTHR12565:SF108 - TRANSCRIPTION FACTOR PIF1 scaffold_3 - View
Cucumis sativus L. CsaV3_3G028610 transcription factor PIF1-like isoform X1 chr3 + View
Cucumis sativus L. CsaV3_7G025510 transcription factor PIF1 chr7 + View
Daucus carota DCAR_000540 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv19237 GWHABJS00000010 - View
Davidia involucrata Dinv43031 GWHABJS00000085 - View
Durio zibethinus Duzib133G0060 NW_019167938.1 + View
Durio zibethinus Duzib138G1278 NW_019167893.1 + View
Erigeron canadensis ECA248G0854 Conyza_canadensis_scaffold:9 - View
Erigeron canadensis ECA247G1435 Conyza_canadensis_scaffold:7 - View
Eucalyptus grandis Eucgr.H00819 Chr08 - View
Eucalyptus grandis Eucgr.K03592 Chr11 + View
Erythranthe guttata Migut.D00504 scaffold_4 + View
Erythranthe guttata Migut.N02248 scaffold_14 + View
Eutrema salsugineum Thhalv10027582m.g PTHR12565:SF145 - TRANSCRIPTION FACTOR BHLH119-RELATED scaffold_1 - View
Eutrema salsugineum Thhalv10001974m.g PTHR12565:SF108 - TRANSCRIPTION FACTOR PIF1 scaffold_12 - View
Fragaria x ananassa FAN24G2094 PTHR12565:SF86 - TRANSCRIPTION FACTOR PIF4-RELATED Fvb2-2 + View
Fragaria x ananassa FAN27G3071 PTHR12565:SF86 - TRANSCRIPTION FACTOR PIF4-RELATED Fvb2-1 - View
Fragaria x ananassa FAN15G0159 PTHR12565:SF86 - TRANSCRIPTION FACTOR PIF4-RELATED Fvb2-4 - View
Fragaria vesca FvH4_2g19790 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED Fvb2 - View
Gossypium hirsutum Gohir.A11G135300 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED A11 + View
Gossypium hirsutum Gohir.D07G208200 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED D07 - View
Gossypium hirsutum Gohir.A07G201900 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED A07 - View
Gossypium hirsutum Gohir.D07G160350 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED D07 + View
Gossypium hirsutum Gohir.D11G141500 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED D11 + View
Gossypium hirsutum Gohir.A07G154050 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED A07 + View
Glycine max Glyma.03G170300 PTHR12565:SF108 - TRANSCRIPTION FACTOR PIF1 Gm03 + View
Glycine max Glyma.10G042800 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED Gm10 + View
Glycine max Glyma.13G130100 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED Gm13 + View
Gossypium raimondii Gorai.001G183400 Chr01 + View
Gossypium raimondii Gorai.007G151900 Chr07 + View
Gossypium raimondii Gorai.001G234900 Chr01 - View
Helianthus annuus HanXRQChr01g0014781 Probable phytochrome interacting factor 3-like 5 HanXRQChr01 - View
Helianthus annuus HanXRQChr10g0280531 Uncharacterized protein, partly conserved in plant genome(s), supported by expression data HanXRQChr10 + View
Hydrangea macrophylla Hma1.2p1_1393F.1_g280200 Hma1.2p1_1393F.1 - View
Lupinus albus Lalb_Chr01g0019351 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED Lalb_Chr01 - View
Lupinus albus Lalb_Chr25g0289661 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED Lalb_Chr25 - View
Lupinus albus Lalb_Chr21g0314221 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED Lalb_Chr21 + View
Lotus japonicus Lj5g0001282 PTHR12565:SF86 - TRANSCRIPTION FACTOR PIF4-RELATED chr5 + View
Lotus japonicus Lj1g0006722 PTHR12565:SF86 - TRANSCRIPTION FACTOR PIF4-RELATED chr1 - View
Lonicera japonica Lj2A1136G50 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_9_11161 Lsat_1_v8_lg_9 + View
Lactuca sativa Lsat_1_v5_gn_5_179121 Lsat_1_v8_lg_5 - View
Malus domestica MD05G1182300 phytochrome interacting factor 3-like 5 Chr05 - View
Malus domestica MD10G1170600 phytochrome interacting factor 3-like 5 Chr10 - View
Manihot esculenta Manes.12G044000 Chromosome12 + View
Manihot esculenta Manes.13G043000 Chromosome13 + View
Medicago truncatula Medtr1g069155 transcription factor chr1 - View
Medicago truncatula Medtr7g099540 transcription factor chr7 + View
Nelumbo nucifera Nn3g19874 chr3 + View
Nelumbo nucifera Nn1g03096 chr1 + View
Nicotiana tabacum Nitab4.5_0000813g0080 Myc-type, basic helix-loop-helix (bHLH) domain, Basic helix-loop-helix leucine zipper transcription factor, plant, Basic helix-loop-helix leucine zipper transcription factor Nitab4.5_0000813 - View
Olea europaea Oeu052106.1 chr4 + View
Petunia axillaris Peaxi162Scf00052g01817 phytochrome interacting factor 3-like 5 Peaxi162Scf00052 - View
Punica granatum PGR044G1939 NC_045134.1 + View
Prunus persica Prupe.8G209100 Pp08 - View
Pisum sativum Psat6g064800 Helix-loop-helix DNA-binding domain chr6LG2 - View
Populus trichocarpa Potri.002G252800 PTHR12565//PTHR12565:SF86 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR PIF4-RELATED Chr02 - View
Phaseolus vulgaris Phvul.001G168700 PTHR12565:SF86 - TRANSCRIPTION FACTOR PIF4-RELATED Chr01 + View
Phaseolus vulgaris Phvul.007G156200 Chr07 + View
Quercus lobata QL09p044299 9 + View
Rosa chinensis RcHm_v2.0_Chr6g0285491 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim01G0258300 chr01 - View
Rhododendron simsii Rhsim13G0042000 chr13 + View
Striga asiatica SGA_v2.0_scaffold42G16154 scaffold42 - View
Salvia bowleyana SalBow6G4067 GWHASIU00000002 - View
Salix brachista Sabra02G0192000 GWHAAZH00000002 - View
Simmondsia chinensis Sc17g0002460 GWHAASQ00000017 + View
Sechium edule Sed0005046 LG09 - View
Sechium edule Sed0002217 LG07 + View
Solanum lycopersicum Solyc09g063010.4 bHLH transcription factor 058 SL4.0ch09 - View
Schrenkiella parvula Sp3g33420 PTHR12565:SF108 - TRANSCRIPTION FACTOR PIF1 ch3-6 - View
Schrenkiella parvula Sp7g26810 PTHR12565:SF134 - TRANSCRIPTION FACTOR BHLH056-RELATED ch7-5 + View
Solanum pennellii Sopen06g002870 Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. | phytochrome interacting factor 3-like 5 (PIL5) | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein . Spenn-ch06 - View
Solanum pennellii Sopen09g025180 Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. | phytochrome interacting factor 3-like 5 (PIL5) | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein . Spenn-ch09 - View
Solanum tuberosum PGSC0003DMG400018950 Phytochrome-interacting factor ST4.03ch09 - View
Trochodendron aralioides TAR633G1458 group2 + View
Trochodendron aralioides TAR365G0889 group16 - View
Trochodendron aralioides TAR362G1325 group17 - View
Trochodendron aralioides TAR636G2769 group1 - View
Theobroma cacao Thecc.01G232500 Phytochrome interacting factor 3-like 5 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104820056 transcription factor PIF1-like isoform X1 NW_010966177.1 - View
Tarenaya hassleriana THA.LOC104814712 transcription factor PIF1 NW_010965451.1 + View
Tripterygium wilfordii TWI14G0020 NC_052249.1 + View
Tripterygium wilfordii TWI23G1235 NC_052239.1 + View
Tripterygium wilfordii TWI59G0312 NC_052248.1 + View
Vaccinium macrocarpon vmacro14770 Similar to PIF1: Transcription factor PIF1 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro02732 Similar to PIF1: Transcription factor PIF1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G0926 CM024071.1 + View
Vigna mungo VMungo1383G2379 CM024070.1 + View
Vitis vinifera GSVIVG01028516001 chr7 + View