Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CDE05G1227 3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G3730 LG-6 + View
Acer truncatum Atru.chr6.3166 chr6 + View
Actinidia chinensis Actinidia26942 Lachesis_group0 - View
Actinidia chinensis Actinidia05120 Lachesis_group19 + View
Avicennia marina MSTRG.14645 ScioBoG_18782_HRSCAF_18867 - View
Avicennia marina MSTRG.13155 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.15971 ScioBoG_19538_HRSCAF_19626 + View
Avicennia marina MSTRG.7234 ScioBoG_102840_HRSCAF_103099 - View
Amaranthus hybridus Ah.09g235210 AmaHy_arrow1_Scaffold_9 - View
Amaranthus hybridus Ah.14g088110 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (HD-ZIP protein PDF2) (Homeodomain transcription factor PDF2) AmaHy_arrow1_Scaffold_14 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.AC1RDM K09338 - homeobox-leucine zipper protein (HD-ZIP) arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.K96LG6 K09338 - homeobox-leucine zipper protein (HD-ZIP) arahy.Tifrunner.gnm1.Arahy.08 - View
Arabidopsis thaliana AT4G21750 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost%2C epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2%2C another L1-specific gene%2C suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. MERISTEM LAYER 1 (ATML1)%3B FUNCTIONS IN: sequence-specific DNA binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: epidermal cell differentiation%2C regulation of transcription%2C DNA-dependent%2C cotyledon development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). MERISTEM LAYER 1 (ATML1)%3B FUNCTIONS IN: sequence-specific DNA binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: epidermal cell differentiation%2C regulation of transcription%2C DNA-dependent%2C cotyledon development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 29 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Homeobox%2C conserved site (InterPro:IPR017970)%2C Homeobox (InterPro:IPR001356)%2C Homeodomain-like (InterPro:IPR009057)%2C Lipid-binding START (InterPro:IPR002913)%2C Homeodomain-related (InterPro:IPR012287)%3B BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr4 + View
Beta vulgaris EL10Ac8g20004 KOG0483//KOG0484 - Transcription factor HEX, contains HOX and HALZ domains // Transcription factor PHOX2/ARIX, contains HOX domain Chr8_EL10_PGA_scaffold4 + View
Camellia sinensis var. sinensis CSS0004146 PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like [Sesamum indicum] Chr8 - View
Cannabis sativa CANSAT64G0261 NC_044379.1 - View
Cannabis sativa CANSAT56G0812 NC_044371.1 - View
Corylus avellana Haze_06755 Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702) 2 + View
Corylus avellana Haze_09636 Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc02_g11560 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 chr2 - View
Citrus clementina Ciclev10014424m.g scaffold_2 - View
Citrus clementina Ciclev10014373m.g scaffold_2 + View
Carpinus fangiana Cfa000261 Cfa01 - View
Carpinus fangiana Cfa020398 Cfa08 - View
Cardamine hirsuta CARHR228490 Homeobox-leucine zipper protein family Chr7 + View
Carya illinoinensis CiPaw.10G068800 K09338 - homeobox-leucine zipper protein (HD-ZIP) Chr10 + View
Carya illinoinensis CiPaw.12G127600 PTHR24326:SF239 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG2 Chr12 + View
Carya illinoinensis CiPaw.03G161300 KOG0484 - Transcription factor PHOX2/ARIX, contains HOX domain Chr03 - View
Carya illinoinensis CiPaw.09G088400 PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Chr09 + View
Citrullus lanatus ClCG05G014570 Homeobox-leucine zipper family protein CG_Chr05 - View
Citrullus lanatus ClCG01G022120 Homeobox-leucine zipper family protein CG_Chr01 - View
Citrullus lanatus ClCG03G004930 Homeobox-leucine zipper family protein CG_Chr03 - View
Cucumis melo MELO3C002477.2 Homeobox-leucine zipper family protein chr12 + View
Carica papaya Cpa.g.sc97.47 supercontig_97 - View
Chenopodium quinoa AUR62021994 PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 C_Quinoa_Scaffold_1862 - View
Chenopodium quinoa AUR62012660 PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 C_Quinoa_Scaffold_2715 + View
Capsella rubella Carub.0007s1965 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED scaffold_7 - View
Cucumis sativus L. CsaV3_1G010990 Homeobox-leucine zipper protein like chr1 - View
Daucus carota DCAR_004201 hypothetical protein DCARv2_Chr1 - View
Daucus carota DCAR_022535 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv40728 GWHABJS00000013 - View
Davidia involucrata Dinv39700 GWHABJS00000001 + View
Davidia involucrata Dinv17824 GWHABJS00000016 + View
Davidia involucrata Dinv02732 GWHABJS00000013 - View
Durio zibethinus Duzib235G0755 NW_019167982.1 + View
Durio zibethinus Duzib213G0350 NW_019167993.1 - View
Durio zibethinus Duzib192G0772 NW_019168037.1 - View
Durio zibethinus Duzib160G0785 NW_019168015.1 + View
Erigeron canadensis ECA236G4342 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.A01715 Chr01 - View
Erythranthe guttata Migut.M01293 scaffold_13 + View
Erythranthe guttata Migut.H01557 scaffold_8 + View
Eutrema salsugineum Thhalv10024488m.g K09338 - homeobox-leucine zipper protein (HD-ZIP) scaffold_1 - View
Fragaria x ananassa FAN21G0112 PF01852 - START domain (START) Fvb3-2 + View
Fragaria x ananassa FAN05G2941 PF00046//PF01852 - Homeobox domain (Homeobox) // START domain (START) Fvb6-3 + View
Fragaria x ananassa FAN25G0553 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Fvb3-1 + View
Fragaria x ananassa FAN25G0873 PTHR24326//PTHR24326:SF239 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG2 Fvb3-1 - View
Fragaria vesca FvH4_3g22020 PTHR24326:SF298 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG3 Fvb3 + View
Fragaria vesca FvH4_3g02520 KOG0483//KOG0484 - Transcription factor HEX, contains HOX and HALZ domains // Transcription factor PHOX2/ARIX, contains HOX domain Fvb3 - View
Fragaria vesca FvH4_6g43300 K09338 - homeobox-leucine zipper protein (HD-ZIP) Fvb6 - View
Gossypium hirsutum Gohir.D10G014600 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED D10 - View
Gossypium hirsutum Gohir.A01G076401 PF01852 - START domain (START) A01 + View
Gossypium hirsutum Gohir.D06G152400 KOG0483//KOG0484 - Transcription factor HEX, contains HOX and HALZ domains // Transcription factor PHOX2/ARIX, contains HOX domain D06 + View
Gossypium hirsutum Gohir.A10G014600 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED A10 - View
Gossypium hirsutum Gohir.D01G063932 PF01852 - START domain (START) D01 + View
Gossypium raimondii Gorai.011G016200 Chr11 - View
Gossypium raimondii Gorai.002G084500 Chr02 + View
Helianthus annuus HanXRQChr05g0129901 Putative START domain; Homeodomain-like; START-like domain HanXRQChr05 - View
Lupinus albus Lalb_Chr03g0028771 K09338 - homeobox-leucine zipper protein (HD-ZIP) Lalb_Chr03 - View
Lonicera japonica Lj1A759T39 GWHAAZE00000001 + View
Lonicera japonica Lj1C1226T9 GWHAAZE00000001 + View
Lonicera japonica Lj1A868G34 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_7_17180 PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Lsat_1_v8_lg_7 - View
Lactuca sativa Lsat_1_v5_gn_4_60501 K09338 - homeobox-leucine zipper protein (HD-ZIP) Lsat_1_v8_lg_4 + View
Magnolia biondii MBI02_g23951_MAGBIO AED:0.09 Chr02 + View
Malus domestica MD05G1342200 protodermal factor 2 Chr05 + View
Malus domestica MD03G1209100 Chr03 - View
Malus domestica MD10G1315800 protodermal factor 2 Chr10 + View
Malus domestica MD11G1223900 homeodomain GLABROUS 2 Chr11 - View
Malus domestica MD09G1107300 homeodomain GLABROUS 2 Chr09 + View
Manihot esculenta Manes.12G075600 Chromosome12 - View
Manihot esculenta Manes.15G074900 Chromosome15 - View
Manihot esculenta Manes.16G011100 Chromosome16 - View
Manihot esculenta Manes.13G071000 Chromosome13 - View
Medicago truncatula Medtr4g047800 homeobox leucine zipper protein chr4 + View
Nelumbo nucifera Nn1g03603 chr1 - View
Nelumbo nucifera Nn1g07068 chr1 + View
Oryza sativa ssp. japonica Os08g0187500 Similar to Roc1. chr08 + View
Petunia axillaris Peaxi162Scf00007g01020 Homeobox-leucine zipper protein HDG2 Peaxi162Scf00007 - View
Punica granatum PGR042G1066 NC_045130.1 + View
Punica granatum PGR031G1996 NC_045127.1 - View
Prunus persica Prupe.4G024800 PTHR24326:SF294 - HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Pp04 - View
Papaver somniferum PSO832G1144 NC_039367.1 + View
Papaver somniferum PSO541G0456 NC_039363.1 + View
Papaver somniferum PSO675G5351 NC_039358.1 + View
Populus trichocarpa Potri.001G419500 K09338 - homeobox-leucine zipper protein (HD-ZIP) Chr01 + View
Populus trichocarpa Potri.004G020400 PTHR24326//PTHR24326:SF294 - FAMILY NOT NAMED // HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-RELATED Chr04 - View
Phaseolus vulgaris Phvul.011G104700 K09338 - homeobox-leucine zipper protein (HD-ZIP) Chr11 - View
Quercus lobata QL08p033382 8 - View
Quercus lobata QL05p074642 5 - View
Rosa chinensis RcHm_v2.0_Chr5g0003831 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim06G0159900 chr06 + View
Rhododendron simsii Rhsim06G0213300 chr06 + View
Rhododendron simsii Rhsim02G0111100 chr02 - View
Striga asiatica SGA_v2.0_scaffold89G27452 scaffold89 + View
Salvia bowleyana SalBow8G4303 GWHASIU00000004 - View
Simmondsia chinensis Sc03g0008820 GWHAASQ00000003 - View
Sechium edule Sed0009495 LG04 + View
Sechium edule Sed0025655 LG14 - View
Sechium edule Sed0026681 LG01 + View
Solanum lycopersicum Solyc10g006420.4 Homeobox-leucine zipper protein HDG2-like (AHRD V3.3 *** A0A2K3P3R2_TRIPR) SL4.0ch10 - View
Solanum lycopersicum Solyc02g080260.4 Woolly SL4.0ch02 + View
Solanum pennellii Sopen10g002370 Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. | protodermal factor 2 (PDF2) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development | LOCATED IN: nucleus | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Homeobox, conserved site , Homeobox , Homeodomain-like , Lipid-binding START , Homeodomain-related | BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400014427 Homeobox protein ST4.03ch10 - View
Selenicereus undatus Hund23498 Scaffold_3410 - View
Selenicereus undatus Hund21382 Scaffold_33680 + View
Trochodendron aralioides TAR627G1055 group6 + View
Trochodendron aralioides TAR626G1241 group3 - View
Theobroma cacao Thecc.07G046300 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 Chromosome_7 - View
Theobroma cacao Thecc.06G215800 Protodermal factor 2 Chromosome_6 + View
Tripterygium wilfordii TWI38G0018 NC_052252.1 + View
Tripterygium wilfordii TWI38G1965 NC_052252.1 - View
Tripterygium wilfordii TWI63G1340 NC_052240.1 - View
Tripterygium wilfordii TWI36G0583 NC_052237.1 + View
Vaccinium macrocarpon vmacro11754 Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro12217 Similar to HDG2: Homeobox-leucine zipper protein HDG2 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro15824 Similar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01001986001 chr19 + View
Zea mays Zm00001eb070050 Zm00001e006870 Homeodomain leucine zipper family IV protein 2 + View