Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
A05p45110 A05 + View
A10p23330 A10 - View
A02p03150 A02 + View
C03p39980 C03 + View
C02p07880 C02 + View
C09p61470 C09 - View
A03p07280 A03 + View
C09p75610 C09 + View
A03p32850 A03 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G13940 LG-11 - View
Aethionema arabicum Aa31LG5G12760 LG-5 + View
Actinidia chinensis Actinidia18074 Lachesis_group11 + View
Arabidopsis lyrata AL6G26500 scaffold_6 + View
Arabidopsis lyrata AL3G11480 scaffold_3 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.V0EZ88 K13379 - reversibly glycosylated polypeptide / UDP-arabinopyranose mutase (RGP, UTM) arahy.Tifrunner.gnm1.Arahy.01 - View
Arabidopsis thaliana AT5G15650 reversibly glycosylated polypeptide 2 RGP2 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It appears to be required for proper cell wall formation. rgp1(at3g02230)/rgp2 double mutants have a male gametophyte lethal phenotype. RGP2 fusion proteins can be found in the cytosol and peripherally associated with the Golgi apparatus. RGP2 was originally identified as Reversibly Glycosylated Polypeptide-2. Constitutive expression in tobacco impairs plant development and virus spread. reversibly glycosylated polypeptide 2 (RGP2)%3B FUNCTIONS IN: transferase activity%2C transferring hexosyl groups%2C glycogenin glucosyltransferase activity%3B INVOLVED IN: response to cadmium ion%2C response to salt stress%3B LOCATED IN: cytosolic ribosome%2C cell wall%2C membrane%3B EXPRESSED IN: male gametophyte%2C guard cell%2C root%2C cultured cell%2C leaf%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Alpha-1%2C4-glucan-protein synthase%2C UDP-forming (InterPro:IPR004901)%3B BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 1 (TAIR:AT3G02230.1)%3B Has 259 Blast hits to 255 proteins in 45 species: Archae - 24%3B Bacteria - 8%3B Metazoa - 0%3B Fungi - 0%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT3G02230 reversibly glycosylated polypeptide 1 RGP1 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It appears to be required for proper cell wall formation. rgp1/rgp2 (at5g15650) double mutants have a male gametophyte lethal phenotype. RGP1 fusion proteins can be found in the cytosol and peripherally associated with the Golgi apparatus. reversibly glycosylated polypeptide 1 (RGP1)%3B FUNCTIONS IN: cellulose synthase (UDP-forming) activity%3B INVOLVED IN: response to salt stress%2C plant-type cell wall biogenesis%3B LOCATED IN: cytosolic ribosome%2C Golgi stack%2C cell wall%2C plasma membrane%2C Golgi trans cisterna%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: Alpha-1%2C4-glucan-protein synthase%2C UDP-forming (InterPro:IPR004901)%3B BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 2 (TAIR:AT5G15650.1)%3B Has 260 Blast hits to 255 proteins in 45 species: Archae - 24%3B Bacteria - 8%3B Metazoa - 0%3B Fungi - 0%3B Plants - 224%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC05g30336 ChrC05 + View
Brassica carinata BcaC09g47687 ChrC09 + View
Brassica carinata BcaC04g18944 ChrC04 - View
Brassica carinata BcaC01g04455 ChrC01 - View
Brassica carinata BcaB01g05033 ChrB01 - View
Brassica carinata BcaC01g04539 ChrC01 + View
Brassica oleracea BolC1t05916H C1 - View
Brassica oleracea BolC9t58984H C9 - View
Brassica oleracea BolC2t06713H C2 + View
Brassica oleracea BolC3t16263H C3 + View
Brassica oleracea BolC9t58896H C9 - View
Brassica oleracea BolC3t13342H C3 + View
Brassica rapa BraA10t44401Z A10 - View
Brassica rapa BraA03t12454Z A03 + View
Brassica rapa BraA05t23150Z A05 - View
Brassica rapa BraA03t10051Z A03 + View
Brassica rapa BraA02t05285Z A02 + View
Cardamine hirsuta CARHR076200 Alpha-1,4-glucan-protein synthase , putative Chr3 + View
Cardamine hirsuta CARHR197670 Alpha-1,4-glucan-protein synthase , putative Chr6 - View
Capsella rubella Carub.0003s0135 5.4.99.30 - UDP-arabinopyranose mutase scaffold_3 + View
Capsella rubella Carub.0006s1380 5.4.99.30 - UDP-arabinopyranose mutase scaffold_6 + View
Davidia involucrata Dinv33856 GWHABJS00000014 + View
Erigeron canadensis ECA238G4109 Conyza_canadensis_scaffold:6 - View
Eutrema salsugineum Thhalv10013907m.g K13379 - reversibly glycosylated polypeptide / UDP-arabinopyranose mutase (RGP, UTM) scaffold_2 + View
Eutrema salsugineum Thhalv10021014m.g K13379 - reversibly glycosylated polypeptide / UDP-arabinopyranose mutase (RGP, UTM) scaffold_13 - View
Fragaria x ananassa FAN02G3980 5.4.99.30 - UDP-arabinopyranose mutase Fvb6-4 + View
Gossypium hirsutum Gohir.D11G037000 PTHR31682//PTHR31682:SF5 - FAMILY NOT NAMED // UDP-ARABINOPYRANOSE MUTASE 3 D11 + View
Gossypium hirsutum Gohir.A11G159600 5.4.99.30 - UDP-arabinopyranose mutase A11 + View
Gossypium raimondii Gorai.007G176700 Chr07 + View
Lupinus albus Lalb_Chr06g0174831 5.4.99.30 - UDP-arabinopyranose mutase Lalb_Chr06 - View
Manihot esculenta Manes.02G058600 Chromosome02 + View
Populus trichocarpa Potri.017G099100 K13379 - reversibly glycosylated polypeptide / UDP-arabinopyranose mutase (RGP, UTM) Chr17 + View
Schrenkiella parvula Sp6g28460 K13379 - reversibly glycosylated polypeptide / UDP-arabinopyranose mutase (RGP, UTM) ch6-6 - View
Schrenkiella parvula Sp3g01300 K13379 - reversibly glycosylated polypeptide / UDP-arabinopyranose mutase (RGP, UTM) ch3-1 + View
Solanum pennellii Sopen02g015960 Alpha-1,4-glucan-protein synthase (UDP-forming) (EC 2.4.1.112) (UPTG) (Reversibly glycosylated polypeptide) - Pisum sativum (Garden pea), reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis | reversibly glycosylated polypeptide 1 (RGP1) | FUNCTIONS IN: cellulose synthase (UDP-forming) activity | INVOLVED IN: response to salt stress, plant-type cell wall biogenesis | LOCATED IN: cytosolic ribosome, Golgi stack, cell wall, plasma membrane, Golgi trans cisterna | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages | CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming | BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 2 Spenn-ch02 - View
Tarenaya hassleriana THA.LOC104802982 UDP-arabinopyranose mutase 2-like NW_010970490.1 + View
Tarenaya hassleriana THA.LOC104820988 UDP-arabinopyranose mutase 2-like NW_010966372.1 - View
Tripterygium wilfordii TWI34G0073 NC_052235.1 - View
Vaccinium macrocarpon vmacro18133 Similar to UPTG1: Probable UDP-arabinopyranose mutase 1 (Solanum tuberosum OX%3D4113) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro05617 Similar to UAM1: UDP-arabinopyranose mutase 1 (Oryza sativa subsp. japonica OX%3D39947) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01036557001 chr14 - View