Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BcaC09g48573 ChrC09 - View
BcaC08g43993 ChrC08 + View
BcaB06g25696 ChrB06 - View
BcaC05g28920 ChrC05 + View
BcaB04g20890 ChrB04 + View
BcaB02g10995 ChrB02 - View
BcaB04g18868 ChrB04 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G2510 LG-10 - View
Arabidopsis lyrata AL3G28590 scaffold_3 - View
Arabidopsis lyrata AL1G60670 scaffold_1 + View
Arabidopsis thaliana AT1G52410 TSK-associating protein 1 Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division%2C TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. TSK-associating protein 1 (TSA1)%3B FUNCTIONS IN: protein binding%2C calcium ion binding%3B INVOLVED IN: response to salt stress%2C defense response to fungus%3B LOCATED IN: chloroplast thylakoid membrane%2C peroxisome%2C vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B BEST Arabidopsis thaliana protein match is: DNA topoisomerase-related (TAIR:AT3G15950.1)%3B Has 59847 Blast hits to 38717 proteins in 2386 species: Archae - 776%3B Bacteria - 9580%3B Metazoa - 25390%3B Fungi - 6405%3B Plants - 3006%3B Viruses - 316%3B Other Eukaryotes - 14374 (source: NCBI BLink). TSK-associating protein 1 (TSA1)%3B FUNCTIONS IN: protein binding%2C calcium ion binding%3B INVOLVED IN: response to salt stress%2C defense response to fungus%3B LOCATED IN: chloroplast thylakoid membrane%2C peroxisome%2C vacuole%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B BEST Arabidopsis thaliana protein match is: DNA topoisomerase-related (TAIR:AT3G15950.1)%3B Has 60400 Blast hits to 39040 proteins in 2421 species: Archae - 836%3B Bacteria - 9681%3B Metazoa - 25540%3B Fungi - 6572%3B Plants - 3009%3B Viruses - 263%3B Other Eukaryotes - 14499 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT3G15950 DNA topoisomerase-like protein Similar to TSK-associating protein 1 (TSA1)%2C contains 10 EFE repeats%2C a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. NAI2%3B INVOLVED IN: ER body organization%2C response to salt stress%3B LOCATED IN: peroxisome%2C membrane%2C ER body%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: TSK-associating protein 1 (TAIR:AT1G52410.2)%3B Has 54717 Blast hits to 36231 proteins in 2578 species: Archae - 1044%3B Bacteria - 11642%3B Metazoa - 21799%3B Fungi - 5619%3B Plants - 2799%3B Viruses - 308%3B Other Eukaryotes - 11506 (source: NCBI BLink). NAI2%3B INVOLVED IN: ER body organization%2C response to salt stress%3B LOCATED IN: peroxisome%2C membrane%2C ER body%3B EXPRESSED IN: 16 plant structures%3B EXPRESSED DURING: 7 growth stages%3B BEST Arabidopsis thaliana protein match is: TSK-associating protein 1 (TAIR:AT1G52410.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr3 - View
Brassica napus C03p47970 C03 - View
Brassica napus C06p13990 C06 + View
Brassica napus A06p01810 A06 - View
Brassica napus A05p19020 A05 - View
Brassica napus C05p50470 C05 + View
Brassica napus C01p48400 C01 + View
Brassica napus A01p38150 A01 + View
Brassica napus A05p33490 A05 + View
Brassica oleracea BolC6t36576H C6 + View
Brassica oleracea BolC5t33794H C5 + View
Brassica oleracea BolC3t17077H C3 - View
Brassica oleracea BolC1t04800H C1 + View
Brassica rapa BraA05t20799Z A05 - View
Brassica rapa BraA05t22171Z A05 + View
Brassica rapa BraA06t23398Z A06 - View
Brassica rapa BraA01t03873Z A01 + View
Cardamine hirsuta CARHR090970 Tsk-associating protein 1 Chr3 + View
Cardamine hirsuta CARHR042550 Tsk-associating protein 1 Chr1 + View
Capsella rubella Carub.0003s1569 scaffold_3 - View
Capsella rubella Carub.0001s4140 scaffold_1 + View
Eutrema salsugineum Thhalv10022078m.g PF05188 - MutS domain II (MutS_II) scaffold_13 + View
Eutrema salsugineum Thhalv10011252m.g scaffold_7 - View
Schrenkiella parvula Sp3g14290 ch3-1 - View
Schrenkiella parvula Sp1g39030 ch1-2 + View
Tarenaya hassleriana THA.LOC104818006 TSK-associating protein 1 isoform X1 NW_010966021.1 + View
Tarenaya hassleriana THA.LOC104810515 TSK-associating protein 1-like isoform X1 NW_010965216.1 - View