Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BcaC06g34971 ChrC06 - View
BcaB03g14199 ChrB03 + View
BcaC08g46664 ChrC08 + View
BcaB03g14961 ChrB03 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G8390 LG-4 - View
Arabidopsis lyrata AL2G31840 scaffold_2 + View
Arabidopsis lyrata AL1G36050 scaffold_1 - View
Avicennia marina MSTRG.1570 ScioBoG_102833_HRSCAF_103052 + View
Arabidopsis thaliana AT1G72175 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652)%2C Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G22510.1)%3B Has 671 Blast hits to 671 proteins in 108 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 504%3B Fungi - 36%3B Plants - 67%3B Viruses - 2%3B Other Eukaryotes - 54 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G22510 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) FUNCTIONS IN: zinc ion binding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652)%2C Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G72175.1)%3B Has 639 Blast hits to 639 proteins in 126 species: Archae - 0%3B Bacteria - 17%3B Metazoa - 440%3B Fungi - 43%3B Plants - 76%3B Viruses - 2%3B Other Eukaryotes - 61 (source: NCBI BLink). RING/U-box protein with domain of unknown function (DUF 1232)%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652)%3B BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G72175.1). Chr1 - View
Brassica napus C07p21110 C07 + View
Brassica napus A07p38290 A07 + View
Brassica napus C06p46350 C06 + View
Brassica oleracea BolC6t39680H C6 + View
Brassica rapa BraA07t31393Z A07 + View
Corylus avellana Haze_21316 Protein of unknown function 3 + View
Coffea canephora Cc10_g09520 Putative RING finger protein 170 chr10 - View
Cardamine hirsuta CARHR065030 RING finger protein Chr2 + View
Cardamine hirsuta CARHR022860 RING finger protein Chr1 - View
Capsella rubella Carub.0002s1898 K15707 - RING finger protein 170 (RNF170) scaffold_2 + View
Capsella rubella Carub.0001s2204 K15707 - RING finger protein 170 (RNF170) scaffold_1 - View
Durio zibethinus Duzib116G0473 NW_019167949.1 + View
Erythranthe guttata Migut.C01326 scaffold_3 + View
Eutrema salsugineum Thhalv10008870m.g K15707 - RING finger protein 170 (RNF170) scaffold_5 + View
Eutrema salsugineum Thhalv10019196m.g K15707 - RING finger protein 170 (RNF170) scaffold_9 - View
Manihot esculenta Manes.18G106200 Chromosome18 - View
Prunus persica Prupe.1G555800 Pp01 + View
Populus trichocarpa Potri.019G078800 K15707 - RING finger protein 170 (RNF170) Chr19 - View
Salix brachista Sabra13G0091100 GWHAAZH00000013 - View
Simmondsia chinensis Sc01g0002000 GWHAASQ00000001 + View
Schrenkiella parvula Sp5g27260 K15707 - RING finger protein 170 (RNF170) ch5-6 + View
Selenicereus undatus Hund16773 Scaffold_33675 - View
Tarenaya hassleriana THA.LOC104800136 E3 ubiquitin-protein ligase RNF170 isoform X1 NW_010969032.1 + View
Tarenaya hassleriana THA.LOC104809729 E3 ubiquitin-protein ligase RNF170 NW_010965051.1 - View