Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BcaB04g20120 ChrB04 - View
BcaC04g23135 ChrC04 + View
BcaC09g50048 ChrC09 - View
BcaB02g10012 ChrB02 - View
BcaC03g18411 ChrC03 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G15120 LG-1 + View
Arabidopsis lyrata AL8G44940 scaffold_8 - View
Arabidopsis thaliana AT3G50820 photosystem II subunit O-2 Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In %3Ci%3EArabidopsis thaliana%3C/i%3E the PsbO proteins are encoded by two genes: %3Ci%3EpsbO1%3C/i%3E and %3Ci%3EpsbO2%3C/i%3E. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII. photosystem II subunit O-2 (PSBO2)%3B FUNCTIONS IN: oxygen evolving activity%2C poly(U) RNA binding%3B INVOLVED IN: photosynthesis%2C light reaction%2C photoinhibition%2C photosystem II assembly%2C photosystem II stabilization%2C regulation of protein amino acid dephosphorylation%3B LOCATED IN: in 9 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilising protein PsbO (InterPro:IPR002628)%3B BEST Arabidopsis thaliana protein match is: PS II oxygen-evolving complex 1 (TAIR:AT5G66570.1)%3B Has 534 Blast hits to 532 proteins in 148 species: Archae - 0%3B Bacteria - 144%3B Metazoa - 1%3B Fungi - 0%3B Plants - 207%3B Viruses - 0%3B Other Eukaryotes - 182 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT5G66570 PS II oxygen-evolving complex 1 Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In %3Ci%3EArabidopsis thaliana%3C/i%3E the PsbO proteins are encoded by two genes: %3Ci%3EpsbO1%3C/i%3E and %3Ci%3EpsbO2%3C/i%3E. PsbO1 is the major isoform in the wild-type. In plsp1-1 mutant plastids%2C the nonmature form of the protein localizes in the membrane. PS II oxygen-evolving complex 1 (PSBO1)%3B FUNCTIONS IN: oxygen evolving activity%2C poly(U) RNA binding%3B INVOLVED IN: in 6 processes%3B LOCATED IN: in 10 components%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilising protein PsbO (InterPro:IPR002628)%3B BEST Arabidopsis thaliana protein match is: photosystem II subunit O-2 (TAIR:AT3G50820.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Brassica napus C07p25300 C07 - View
Brassica napus C09p11800 C09 - View
Brassica napus A09p09930 A09 - View
Brassica napus A01p23880 A01 + View
Brassica napus C02p64890 C02 - View
Brassica napus C01p29590 C01 + View
Brassica oleracea BolC1t02901H C1 + View
Brassica oleracea BolC9t54070H C9 - View
Brassica rapa BraA01t02295Z A01 + View
Cardamine hirsuta CARHR281170 Oxygen-evolving enhancer 33 Chr8 - View
Cardamine hirsuta CARHR160360 Oxygen-evolving enhancer 33 Chr5 - View
Capsella rubella Carub.0008s2794 K02716 - photosystem II oxygen-evolving enhancer protein 1 (psbO) scaffold_8 - View
Eutrema salsugineum Thhalv10004563m.g K02716 - photosystem II oxygen-evolving enhancer protein 1 (psbO) scaffold_6 + View
Eutrema salsugineum Thhalv10010535m.g K02716 - photosystem II oxygen-evolving enhancer protein 1 (psbO) scaffold_16 + View
Schrenkiella parvula Sp5g11400 K02716 - photosystem II oxygen-evolving enhancer protein 1 (psbO) ch5-1 + View
Schrenkiella parvula Sp2g30140 K02716 - photosystem II oxygen-evolving enhancer protein 1 (psbO) ch2-4 - View
Tarenaya hassleriana THA.LOC104821285 oxygen-evolving enhancer protein 1-2%2C chloroplastic-like NW_010966459.1 - View
Tarenaya hassleriana THA.LOC104826717 oxygen-evolving enhancer protein 1-2%2C chloroplastic NW_010960188.1 + View