Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
BcaB01g00208 ChrB01 + View
BcaB02g08484 ChrB02 - View
BcaC08g44676 ChrC08 - View
BcaC02g09074 ChrC02 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Arabidopsis lyrata AL5G35350 scaffold_5 - View
Arabidopsis thaliana AT3G54300 vesicle-associated membrane protein 727 Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal. vesicle-associated membrane protein 727 (VAMP727)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: vacuole organization%2C protein targeting to vacuole%3B LOCATED IN: endosome%2C SNARE complex%2C membrane%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908)%2C Longin-like (InterPro:IPR011012)%2C Synaptobrevin (InterPro:IPR001388)%3B BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 726 (TAIR:AT1G04760.1)%3B Has 2397 Blast hits to 2395 proteins in 262 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 970%3B Fungi - 430%3B Plants - 618%3B Viruses - 0%3B Other Eukaryotes - 379 (source: NCBI BLink). Chr3 - View
Brassica napus A04p05450 A04 + View
Brassica napus C08p29530 C08 - View
Brassica napus A09p47300 A09 - View
Brassica napus C06p22040 C06 - View
Brassica napus A07p22050 A07 - View
Brassica napus C04p38130 C04 + View
Brassica oleracea BolC4t25388H C4 + View
Brassica oleracea BolC6t37392H C6 - View
Brassica oleracea BolC8t50559H C8 - View
Brassica rapa BraA09t40191Z A09 - View
Brassica rapa BraA07t29888Z A07 - View
Brassica rapa BraA04t16247Z A04 + View
Cardamine hirsuta CARHR164230 vesicle-associated membrane protein 727 Chr5 - View
Capsella rubella Carub.0005s2089 PTHR21136//PTHR21136:SF73 - SNARE PROTEINS // SUBFAMILY NOT NAMED scaffold_5 - View
Eutrema salsugineum Thhalv10010674m.g PTHR21136//PTHR21136:SF73 - SNARE PROTEINS // SUBFAMILY NOT NAMED scaffold_16 + View
Schrenkiella parvula Sp5g08090 PTHR21136//PTHR21136:SF73 - SNARE PROTEINS // SUBFAMILY NOT NAMED ch5-1 + View
Tarenaya hassleriana THA.LOC104824204 vesicle-associated membrane protein 727 NW_010966881.1 + View