Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G44120 RmlC-like cupins superfamily protein Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene%2C CRA2%2C which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. CRUCIFERINA (CRA1)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: response to abscisic acid stimulus%3B EXPRESSED IN: guard cell%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1)%3B Has 984 Blast hits to 960 proteins in 164 species: Archae - 0%3B Bacteria - 115%3B Metazoa - 2%3B Fungi - 0%3B Plants - 867%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). CRUCIFERINA (CRA1)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: response to abscisic acid stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: guard cell%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1)%3B Has 1047 Blast hits to 1009 proteins in 168 species: Archae - 0%3B Bacteria - 115%3B Metazoa - 2%3B Fungi - 0%3B Plants - 930%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr5 - View
AT1G03880 cruciferin 2 Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. cruciferin 2 (CRU2)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: seed germination%2C response to abscisic acid stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3)%3B Has 919 Blast hits to 884 proteins in 120 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 2%3B Fungi - 0%3B Plants - 906%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G21900 LG-2 - View
Aethionema arabicum Aa31LG5G3120 LG-5 + View
Acer truncatum Atru.chr4.2055 chr4 - View
Actinidia chinensis Actinidia09549 Lachesis_group15 + View
Arabidopsis lyrata AL8G15910 scaffold_8 + View
Arabidopsis lyrata AL7G24030 scaffold_7 - View
Arabidopsis lyrata AL1G13460 scaffold_1 + View
Brassica carinata BcaB03g12577 ChrB03 + View
Brassica carinata BcaC07g38336 ChrC07 + View
Brassica carinata BcaC07g42223 ChrC07 - View
Brassica carinata BcaC09g51654 ChrC09 + View
Brassica napus C08p52590 C08 - View
Brassica napus A01p09420 A01 - View
Brassica napus A10p02410 A10 + View
Brassica napus C05p02230 C05 + View
Brassica napus C01p10970 C01 - View
Brassica napus C08p10900 C08 + View
Brassica napus A08p20020 A08 - View
Brassica oleracea BolC1t01059H C1 - View
Brassica rapa BraA10t42510Z A10 + View
Brassica rapa BraA01t00884Z A01 - View
Brassica rapa BraA08t33962Z A08 - View
Beta vulgaris EL10Ac3g05003 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0042334 11S globulin-like protein [Actinidia chinensis] Chr13 + View
Corylus avellana Haze_11382 Similar to 11S globulin (Juglans nigra OX%3D16719) 9 - View
Citrus clementina Ciclev10004854m.g scaffold_9 + View
Cardamine hirsuta CARHR003210 11S seed storage globulin B Chr1 + View
Cardamine hirsuta CARHR236300 11S seed storage globulin A Chr7 + View
Carya illinoinensis CiPaw.04G186700 PF00190 - Cupin (Cupin_1) Chr04 + View
Citrullus lanatus ClCG07G001060 11S seed storage globulin CG_Chr07 + View
Carica papaya Cpa.g.sc165.7 supercontig_165 + View
Capsella rubella Carub.0007s1216 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_7 - View
Capsella rubella Carub.0001s0302 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_1 + View
Capsella rubella Carub.0008s0440 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_8 + View
Cucumis sativus L. CsaV3_3G022240 11S seed storage globulin A chr3 - View
Erigeron canadensis ECA248G2272 Conyza_canadensis_scaffold:9 + View
Erythranthe guttata Migut.D00425 scaffold_4 + View
Eutrema salsugineum Thhalv10009863m.g PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_5 - View
Eutrema salsugineum Thhalv10003429m.g PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_17 + View
Eutrema salsugineum Thhalv10027035m.g PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_1 - View
Fragaria x ananassa FAN27G1588 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED Fvb2-1 + View
Gossypium hirsutum Gohir.A08G045600 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED A08 - View
Gossypium hirsutum Gohir.D08G056100 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED D08 - View
Glycine max Glyma.19G164800 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED Gm19 - View
Glycine max Glyma.03G163400 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED Gm03 - View
Gossypium raimondii Gorai.004G057200 Chr04 - View
Lupinus albus Lalb_Chr25g0289961 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Lalb_Chr25 + View
Lupinus albus Lalb_Chr21g0313861 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED Lalb_Chr21 - View
Magnolia biondii MBI07_g16930_MAGBIO AED:0.39 Chr07 - View
Manihot esculenta Manes.12G032600 Chromosome12 - View
Manihot esculenta Manes.13G034300 Chromosome13 + View
Manihot esculenta Manes.15G041200 Chromosome15 + View
Nicotiana tabacum Nitab4.5_0000326g0110 RmlC-like jelly roll fold, 11-S seed storage protein, plant, 11-S seed storage protein, conserved site, Cupin 1, RmlC-like cupin domain Nitab4.5_0000326 - View
Prunus persica Prupe.8G223300 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Pp08 + View
Rhododendron simsii Rhsim13G0035100 chr13 - View
Striga asiatica SGA_v2.0_scaffold1G00617 scaffold1 - View
Sechium edule Sed0008213 LG05 + View
Schrenkiella parvula Sp7g26500 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED ch7-5 + View
Schrenkiella parvula Sp1g02740 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED ch1-1 + View
Trochodendron aralioides TAR636G0607 group1 + View
Tarenaya hassleriana THA.LOC104801153 12S seed storage protein CRB-like NW_010969548.1 - View
Tarenaya hassleriana THA.LOC104824683 cruciferin PGCRURSE5 NW_010966933.1 - View
Tarenaya hassleriana THA.LOC104826044 12S seed storage protein CRA1-like NW_010967707.1 + View
Tripterygium wilfordii TWI18G0968 NC_052241.1 + View
Tripterygium wilfordii TWI12G0797 NC_052243.1 + View