Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT3G60190 DYNAMIN-like 1E At3g60190 encodes Arabidopsis dynamin-related protein 1E%2C DRP1E%2C also known as EDR3%2C ADL4 and ADL1E%2C which is 624 amino acid residues long%2C has a predicted mass of 69.8 kDa and a pI of 7.5. Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1)%2C consisting of five members in Arabidopsis (A%2C B%2C C%2C D%2C E). This class is characterized by having an N-terminal GTPase domain%2C a central %E2%80%98dynamin 2%E2%80%98 domain and a C-terminal GTPase effector domain (GED)%2C a typical structure for plant dynamin-related proteins. However%2C this class lacks a PH domain and a proline-rich domain%2C which are found in classical animal dynamin-like proteins. Based on work on animal dynamins%2C the plant DRP1 proteins should be able to form polymeric structures that wrap around membranes to facilitate membrane tubulation and pinching off of vesicles%2C processes that are essential to vesicle trafficking and membrane compartmentalization. The edr3 mutation causes a P77L substitution in the G2 motif of the GTPase domain of DRP1E. edr3 mutant Arabidopsis plants display enhanced cell death in response to powdery mildew infection. DYNAMIN-like 1E (DL1E)%3B FUNCTIONS IN: GTP binding%2C GTPase activity%3B INVOLVED IN: response to cadmium ion%2C vesicle-mediated transport%2C defense response to fungus%3B LOCATED IN: mitochondrion%2C plasma membrane%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130)%2C Dynamin%2C GTPase domain (InterPro:IPR001401)%2C Dynamin%2C GTPase region%2C conserved site (InterPro:IPR019762)%2C GTPase effector domain%2C GED (InterPro:IPR020850)%2C Dynamin central region (InterPro:IPR000375)%3B BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1D (TAIR:AT2G44590.3)%3B Has 2915 Blast hits to 2753 proteins in 324 species: Archae - 2%3B Bacteria - 53%3B Metazoa - 1058%3B Fungi - 869%3B Plants - 577%3B Viruses - 0%3B Other Eukaryotes - 356 (source: NCBI BLink). Chr3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G14330 LG-10 - View
Acer truncatum Atru.chr5.36 chr5 - View
Actinidia chinensis Actinidia30958 Lachesis_group0 + View
Actinidia chinensis Actinidia25939 Lachesis_group22 - View
Actinidia chinensis Actinidia05793 Lachesis_group20 + View
Arabidopsis lyrata AL4G43630 scaffold_4 - View
Arabidopsis lyrata AL5G42400 scaffold_5 - View
Avicennia marina MSTRG.20660 ScioBoG_26180_HRSCAF_26306 - View
Avicennia marina MSTRG.28129 ScioBoG_94932_HRSCAF_95134 - View
Avicennia marina MSTRG.4965 ScioBoG_102838_HRSCAF_103081 + View
Amaranthus hybridus Ah.05g177610 Dynamin-related protein 1E (Dynamin-like protein 4) (Dynamin-like protein DLP2) (Dynamin-like protein E) AmaHy_arrow1_Scaffold_5 + View
Aquilegia oxysepala Aqoxy3G02541 CHR03 - View
Brassica carinata BcaC07g40413 ChrC07 - View
Brassica carinata BcaC02g07101 ChrC02 - View
Brassica carinata BcaB06g29387 ChrB06 - View
Brassica carinata BcaC02g10118 ChrC02 - View
Brassica carinata BcaC07g40518 ChrC07 + View
Brassica carinata BcaB02g08187 ChrB02 + View
Brassica napus C04p71100 C04 - View
Brassica napus C04p32510 C04 + View
Brassica napus A09p52470 A09 - View
Brassica napus A04p33390 A04 - View
Brassica napus A04p01790 A04 + View
Brassica napus C08p35210 C08 - View
Brassica oleracea BolC8t51116H C8 - View
Brassica oleracea BolC4t28613H C4 - View
Brassica oleracea BolC4t24816H C4 + View
Brassica rapa BraA04t18800Z A04 - View
Brassica rapa BraA09t40677Z A09 - View
Brassica rapa BraA04t15903Z A04 + View
Beta vulgaris EL10Ac1g00708 PTHR11566:SF80 - DYNAMIN-RELATED PROTEIN 1C Chr1_EL10_PGA_scaffold3 + View
Cannabis sativa CANSAT25G2662 NC_044370.1 + View
Corylus avellana Haze_02913 Similar to DRP1E: Dynamin-related protein 1E (Arabidopsis thaliana OX%3D3702) 1 + View
Coffea canephora Cc02_g25720 Dynamin-related protein 1E chr2 + View
Citrus clementina Ciclev10019323m.g scaffold_3 + View
Ceratophyllum demersum CDE11G0922 9 - View
Ceratophyllum demersum CDE02G0402 1 + View
Ceratophyllum demersum CDE06G1315 4 + View
Cardamine hirsuta CARHR139810 DYNAMIN-like 1D Chr4 - View
Cardamine hirsuta CARHR170510 DYNAMIN-like 1E Chr5 - View
Carya illinoinensis CiPaw.13G021000 K01528 - dynamin GTPase (DNM) Chr13 + View
Citrullus lanatus ClCG05G002830 Dynamin, putative CG_Chr05 - View
Cucumis melo MELO3C006260.2 Dynamin, putative chr06 - View
Carica papaya Cpa.g.sc52.64 supercontig_52 - View
Chenopodium quinoa AUR62013798 DRP1E: Dynamin-related protein 1E C_Quinoa_Scaffold_1412 - View
Capsella rubella Carub.0004s2714 PTHR11566//PTHR11566:SF80 - DYNAMIN // DYNAMIN-RELATED PROTEIN 1C scaffold_4 - View
Capsella rubella Carub.0005s2692 PTHR11566//PTHR11566:SF80 - DYNAMIN // DYNAMIN-RELATED PROTEIN 1C scaffold_5 - View
Cucumis sativus L. CsaV3_3G049560 Dynamin, putative chr3 - View
Cucumis sativus L. CsaV3_3G010360 Dynamin, putative chr3 - View
Daucus carota DCAR_015775 hypothetical protein DCARv2_Chr4 + View
Daucus carota DCAR_029523 hypothetical protein DCARv2_Chr9 + View
Davidia involucrata Dinv44012 GWHABJS00000020 - View
Davidia involucrata Dinv43583 GWHABJS00000016 - View
Durio zibethinus Duzib205G0268 NW_019168381.1 - View
Erigeron canadensis ECA236G1449 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.D01169 Chr04 - View
Erythranthe guttata Migut.N01710 scaffold_14 - View
Erythranthe guttata Migut.B01478 scaffold_2 - View
Eutrema salsugineum Thhalv10001749m.g PTHR11566:SF80 - DYNAMIN-RELATED PROTEIN 1C scaffold_22 - View
Eutrema salsugineum Thhalv10005838m.g PTHR11566:SF80 - DYNAMIN-RELATED PROTEIN 1C scaffold_19 + View
Fragaria x ananassa FAN03G2146 PTHR11566//PTHR11566:SF80 - DYNAMIN // DYNAMIN-RELATED PROTEIN 1C Fvb7-3 - View
Fragaria x ananassa FAN10G3282 PTHR11566//PTHR11566:SF80 - DYNAMIN // DYNAMIN-RELATED PROTEIN 1C Fvb7-1 - View
Fragaria vesca FvH4_7g08650 PTHR11566:SF80 - DYNAMIN-RELATED PROTEIN 1C Fvb7 + View
Gossypium hirsutum Gohir.D12G213900 PTHR11566//PTHR11566:SF77 - DYNAMIN // SUBFAMILY NOT NAMED D12 - View
Gossypium hirsutum Gohir.A12G211300 PTHR11566//PTHR11566:SF77 - DYNAMIN // SUBFAMILY NOT NAMED A12 - View
Glycine max Glyma.03G102800 PTHR11566//PTHR11566:SF80 - DYNAMIN // DYNAMIN-RELATED PROTEIN 1C Gm03 - View
Gossypium raimondii Gorai.008G229500 Chr08 - View
Helianthus annuus HanXRQChr06g0168231 Putative dynamin central domain; Dynamin, GTPase domain; GTPase effector domain; Dynamin superfamily; P-loop containing nucleoside triphosphate hydrolase HanXRQChr06 - View
Hydrangea macrophylla Hma1.2p1_0021F.1_g014310 Hma1.2p1_0021F.1 + View
Lupinus albus Lalb_Chr01g0008191 K01528 - dynamin GTPase (DNM) Lalb_Chr01 + View
Lupinus albus Lalb_Chr03g0040881 PTHR11566//PTHR11566:SF77 - DYNAMIN // SUBFAMILY NOT NAMED Lalb_Chr03 - View
Lotus japonicus Lj3g0025908 PTHR11566:SF80 - DYNAMIN-RELATED PROTEIN 1C chr3 + View
Lonicera japonica Lj6P332T6 GWHAAZE00000006 - View
Lactuca sativa Lsat_1_v5_gn_7_11601 Lsat_1_v8_lg_7 - View
Lactuca sativa Lsat_1_v5_gn_0_4961 K01528 - dynamin GTPase (DNM) Lsat_1_v8_lg_1 + View
Magnolia biondii MBI04_g08845_MAGBIO AED:0.15 Chr04 + View
Malus domestica MD07G1087500 DYNAMIN-like 1E Chr07 + View
Malus domestica MD02G1226500 DYNAMIN-like 1E Chr02 - View
Manihot esculenta Manes.05G059400 Chromosome05 + View
Medicago truncatula Medtr4g098920 dynamin-like protein 1E chr4 + View
Medicago truncatula Medtr8g009510 dynamin 1E-like protein chr8 + View
Nicotiana tabacum Nitab4.5_0004088g0090 Dynamin, GTPase domain, Dynamin superfamily, Dynamin central domain, Dynamin GTPase effector, GTPase effector domain, GED, Dynamin, GTPase region, conserved site, P-loop containing nucleoside triphosphate hydrolase Nitab4.5_0004088 + View
Olea europaea Oeu037406.1 chr3 - View
Oryza sativa ssp. japonica Os10g0567800 Similar to predicted protein. Similar to Dynamin-related protein 1E (Dynamin-like protein E) (Dynamin-like protein 4) (Dynamin-like protein DLP2). chr10 - View
Petunia axillaris Peaxi162Scf00103g01918 DYNAMIN-like 1E Peaxi162Scf00103 + View
Punica granatum PGR004G0983 NC_045131.1 + View
Punica granatum PGR042G1185 NC_045130.1 + View
Prunus persica Prupe.2G114300 PTHR11566//PTHR11566:SF77 - DYNAMIN // SUBFAMILY NOT NAMED Pp02 + View
Populus trichocarpa Potri.014G043600 PTHR11566//PTHR11566:SF77 - DYNAMIN // SUBFAMILY NOT NAMED Chr14 - View
Populus trichocarpa Potri.002G135100 PTHR11566//PTHR11566:SF77 - DYNAMIN // SUBFAMILY NOT NAMED Chr02 - View
Phaseolus vulgaris Phvul.010G040900 PTHR11566:SF80 - DYNAMIN-RELATED PROTEIN 1C Chr10 - View
Phaseolus vulgaris Phvul.003G228100 PTHR11566//PTHR11566:SF77 - DYNAMIN // SUBFAMILY NOT NAMED Chr03 - View
Quercus lobata QL04p025889 4 - View
Rhododendron simsii Rhsim07G0039700 chr07 + View
Rhododendron simsii Rhsim01G0144600 chr01 + View
Salix brachista Sabra02G0104900 GWHAAZH00000002 - View
Simmondsia chinensis Sc02g0003300 GWHAASQ00000002 - View
Sechium edule Sed0027891 LG12 - View
Solanum lycopersicum Solyc01g088520.3 Dynamin-related protein 1E (AHRD V3.3 *-* A0A1U8EK16_CAPAN) SL4.0ch01 - View
Schrenkiella parvula Sp4g26680 PTHR11566:SF80 - DYNAMIN-RELATED PROTEIN 1C ch4-6 - View
Schrenkiella parvula Sp5g03020 PTHR11566//PTHR11566:SF80 - DYNAMIN // DYNAMIN-RELATED PROTEIN 1C ch5-1 + View
Solanum pennellii Sopen01g035380 At3g60190 encodes Arabidopsis dynamin-related protein 1E, DRP1E, also known as EDR3, ADL4 and ADL1E, which is 624 amino acid residues long, has a predicted mass of 69.8 kDa and a pI of 7.5. Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1), consisting of five members in Arabidopsis (A, B, C, D, E). This class is characterized by having an N-terminal GTPase domain, a central ëdynamin 2ë domain and a C-terminal GTPase effector domain (GED), a typical structure for plant dynamin-related proteins. However, this class lacks a PH domain and a proline-rich domain, which are found in classical animal dynamin-like proteins. Based on work on animal dynamins, the plant DRP1 proteins should be able to form polymeric structures that wrap around membranes to facilitate membrane tubulation and pinching off of vesicles, processes that are essential to vesicle trafficking and membrane compartmentalization. The edr3 mutation causes a P77L substitution in the G2 motif of the GTPase domain of DRP1E. edr3 mutant Arabidopsis plants display enhanced cell death in response to powdery mildew infection. | DYNAMIN-like 1E (DL1E) | FUNCTIONS IN: GTP binding, GTPase activity | INVOLVED IN: response to cadmium ion, vesicle-mediated transport, defense response to fungus | LOCATED IN: mitochondrion, plasma membrane, vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector , Dynamin, GTPase domain , Dynamin, GTPase region, conserved site , GTPase effector domain, GED , Dynamin central region | BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1D Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400007013 Phragmoplastin ST4.03ch05 - View
Solanum tuberosum PGSC0003DMG400001682 Dynamin ST4.03ch01 + View
Trochodendron aralioides TAR375G0797 group15 - View
Trochodendron aralioides TAR374G0628 group12 - View
Theobroma cacao Thecc.10G002000 DYNAMIN-like 1E Chromosome_10 - View
Tarenaya hassleriana THA.LOC104802509 dynamin-related protein 1E NW_010970490.1 + View
Tarenaya hassleriana THA.LOC104827582 dynamin-related protein 1E-like NW_010967884.1 - View
Tripterygium wilfordii TWI23G1300 NC_052239.1 - View
Tripterygium wilfordii TWI14G0171 NC_052249.1 + View
Vaccinium macrocarpon vmacro21090 Similar to DRP1E: Dynamin-related protein 1E (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro13535 Similar to DRP1E: Dynamin-related protein 1E (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01018380001 chr15 - View