Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G28520 cruciferin 3 Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. cruciferin 3 (CRU3)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: response to abscisic acid stimulus%2C embryo development ending in seed dormancy%3B LOCATED IN: protein body%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3)%3B Has 6518 Blast hits to 3043 proteins in 462 species: Archae - 6%3B Bacteria - 857%3B Metazoa - 718%3B Fungi - 277%3B Plants - 2299%3B Viruses - 10%3B Other Eukaryotes - 2351 (source: NCBI BLink). Chr4 + View
AT5G44120 RmlC-like cupins superfamily protein Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene%2C CRA2%2C which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. CRUCIFERINA (CRA1)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: response to abscisic acid stimulus%3B EXPRESSED IN: guard cell%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1)%3B Has 984 Blast hits to 960 proteins in 164 species: Archae - 0%3B Bacteria - 115%3B Metazoa - 2%3B Fungi - 0%3B Plants - 867%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). CRUCIFERINA (CRA1)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: response to abscisic acid stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: guard cell%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1)%3B Has 1047 Blast hits to 1009 proteins in 168 species: Archae - 0%3B Bacteria - 115%3B Metazoa - 2%3B Fungi - 0%3B Plants - 930%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr5 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G3120 LG-5 + View
Aethionema arabicum Aa31LG2G21900 LG-2 - View
Aethionema arabicum Aa31LG1G9070 LG-1 + View
Actinidia chinensis Actinidia09549 Lachesis_group15 + View
Actinidia chinensis Actinidia39904 Lachesis_group17 - View
Arabidopsis lyrata AL8G15910 scaffold_8 + View
Arabidopsis lyrata AL1G13460 scaffold_1 + View
Arabidopsis lyrata AL7G24030 scaffold_7 - View
Brassica carinata BcaC03g16628 ChrC03 - View
Brassica carinata BcaC07g38336 ChrC07 + View
Brassica carinata BcaC07g42223 ChrC07 - View
Brassica carinata BcaC06g31652 ChrC06 + View
Brassica carinata BcaC05g24492 ChrC05 - View
Brassica carinata BcaC06g34592 ChrC06 + View
Brassica napus C05p02230 C05 + View
Brassica napus C01p10970 C01 - View
Brassica napus A10p02410 A10 + View
Brassica napus C07p26770 C07 - View
Brassica napus C08p10900 C08 + View
Brassica napus A06p47460 A06 + View
Brassica napus A09p68160 A09 - View
Brassica napus A02p28230 A02 - View
Brassica napus C08p52590 C08 - View
Brassica napus C02p44620 C02 - View
Brassica oleracea BolC7t43205H C7 - View
Brassica oleracea BolC8t52786H C8 - View
Brassica oleracea BolC2t10506H C2 - View
Brassica oleracea BolC1t01059H C1 - View
Brassica oleracea BolC5t29001H C5 + View
Brassica rapa BraA09t42151Z A09 - View
Brassica rapa BraA02t07858Z A02 - View
Brassica rapa BraA06t27615Z A06 + View
Brassica rapa BraA10t42510Z A10 + View
Beta vulgaris EL10Ac3g05003 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0013467 PREDICTED: legumin B-like [Nicotiana sylvestris] Chr5 + View
Cannabis sativa CANSAT78G2040 NC_044376.1 + View
Corylus avellana Haze_11382 Similar to 11S globulin (Juglans nigra OX%3D16719) 9 - View
Corylus avellana Haze_24632 Similar to 11S globulin seed storage protein 2 (Sesamum indicum OX%3D4182) 8 + View
Coffea canephora Cc03_g05570 Putative 11S globulin subunit beta chr3 - View
Citrus clementina Ciclev10004854m.g scaffold_9 + View
Carpinus fangiana Cfa002425 Cfa01 + View
Cardamine hirsuta CARHR236300 11S seed storage globulin A Chr7 + View
Cardamine hirsuta CARHR003210 11S seed storage globulin B Chr1 + View
Cardamine hirsuta CARHR179150 11S seed storage globulin Chr6 - View
Carya illinoinensis CiPaw.04G186700 PF00190 - Cupin (Cupin_1) Chr04 + View
Carya illinoinensis CiPaw.01G184100 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Chr01 + View
Carya illinoinensis CiPaw.03G264300 PF00190 - Cupin (Cupin_1) Chr03 + View
Citrullus lanatus ClCG06G007020 11S seed storage globulin B2 CG_Chr06 + View
Carica papaya Cpa.g.sc165.7 supercontig_165 + View
Carica papaya Cpa.g.sc44.53 supercontig_44 - View
Chenopodium quinoa AUR62015569 FA18: 13S globulin seed storage protein 2 C_Quinoa_Scaffold_2751 + View
Capsella rubella Carub.0001s0302 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_1 + View
Capsella rubella Carub.0008s0440 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_8 + View
Capsella rubella Carub.0007s1216 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_7 - View
Cucumis sativus L. CsaV3_2G012740 11S seed storage globulin chr2 - View
Davidia involucrata Dinv29858 GWHABJS00000016 + View
Davidia involucrata Dinv22406 GWHABJS00000007 + View
Erigeron canadensis ECA248G2272 Conyza_canadensis_scaffold:9 + View
Erigeron canadensis ECA247G3362 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.H03042 Chr08 + View
Eutrema salsugineum Thhalv10009863m.g PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_5 - View
Eutrema salsugineum Thhalv10003429m.g PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_17 + View
Eutrema salsugineum Thhalv10027035m.g PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_1 - View
Glycine max Glyma.10G037100 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED Gm10 - View
Glycine max Glyma.19G164800 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED Gm19 - View
Glycine max Glyma.03G163400 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED Gm03 - View
Hydrangea macrophylla Hma1.2p1_0273F.1_g109680 Hma1.2p1_0273F.1 + View
Lupinus albus Lalb_Chr25g0289961 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Lalb_Chr25 + View
Lonicera japonica Lj1A66T65 GWHAAZE00000001 + View
Lonicera japonica Lj2C1151T4 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_5_183501 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Lsat_1_v8_lg_5 + View
Manihot esculenta Manes.12G032600 Chromosome12 - View
Manihot esculenta Manes.15G041200 Chromosome15 + View
Manihot esculenta Manes.13G034300 Chromosome13 + View
Medicago truncatula Medtr1g069920 glycinin A5A4B3 subunit chr1 + View
Rhododendron simsii Rhsim01G0263100 chr01 + View
Striga asiatica SGA_v2.0_scaffold1G00617 scaffold1 - View
Salvia bowleyana SalBow4G2279 GWHASIU00000008 + View
Sechium edule Sed0026431 LG04 + View
Solanum lycopersicum Solyc09g025220.2 11S globulin seed storage protein 2 (AHRD V3.3 *** A0A2G2X5V4_CAPBA) SL4.0ch09 + View
Solanum lycopersicum Solyc09g090150.4 Seed storage protein (AHRD V3.3 *** Q2TPW5_9ROSI) SL4.0ch09 - View
Schrenkiella parvula Sp7g26500 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED ch7-5 + View
Schrenkiella parvula Sp1g02740 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED ch1-1 + View
Schrenkiella parvula Sp2g08950 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED ch2-4 + View
Solanum pennellii Sopen09g033070 11S globulin subunit beta precursor | 11S globulin delta chain (11S globulin basic chain)) - Cucurbita maxima (Pumpkin) (Winter squash), Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | CRUCIFERINA (CRA1) | FUNCTIONS IN: nutrient reservoir activity | INVOLVED IN: response to abscisic acid stimulus | LOCATED IN: endomembrane system | EXPRESSED IN: guard cell, seed | EXPRESSED DURING: seedling growth, seed development stages | CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site , Cupin, RmlC-type , Cupin 1 , RmlC-like jelly roll fold , 11-S seed storage protein, plant | BEST Arabidopsis thaliana protein match is: cruciferin 2 Spenn-ch09 - View
Solanum pennellii Sopen09g028300 Glutelin type-A 2 precursor (Glutelin type II) - Oryza sativa (Rice), Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | CRUCIFERINA (CRA1) | FUNCTIONS IN: nutrient reservoir activity | INVOLVED IN: response to abscisic acid stimulus | LOCATED IN: endomembrane system | EXPRESSED IN: guard cell, seed | EXPRESSED DURING: seedling growth, seed development stages | CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site , Cupin, RmlC-type , Cupin 1 , RmlC-like jelly roll fold , 11-S seed storage protein, plant | BEST Arabidopsis thaliana protein match is: cruciferin 2 Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG400010297 11S globulin seed storage protein 2 basic chain ST4.03ch09 + View
Trochodendron aralioides TAR636G0607 group1 + View
Trochodendron aralioides TAR365G0135 group16 - View
Tarenaya hassleriana THA.LOC104801153 12S seed storage protein CRB-like NW_010969548.1 - View
Tarenaya hassleriana THA.LOC104815965 12S seed storage protein CRD NW_010965696.1 + View
Tarenaya hassleriana THA.LOC104826044 12S seed storage protein CRA1-like NW_010967707.1 + View
Tripterygium wilfordii TWI18G0968 NC_052241.1 + View
Utricularia gibba unitig_578.g16426 unitig_578 + View
Vaccinium macrocarpon vmacro15443 Similar to 11S globulin seed storage protein 1 (Carya illinoinensis OX%3D32201) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01028337001 chr7 + View