Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Arabidopsis thaliana | AT4G14670 | casein lytic proteinase B2 This locus was originally annotated as encoding ClpB2 (also referred to as Hsp92.7)%2C which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. However%2C according to Lee et al. (2007%2C Plant Journal%2C 49:115-127)%2C there is no evidence for expression of an appropriate-sized mRNA from this locus. Re-annotation of the genome indicates that this locus potentially encodes a 68.8-kDa protein%2C containing only the N-terminal two thirds of the originally predicted open reading frame. This locus contains a 626-bp deletion in WS ecotype compared with the Col ecotype%2C which eliminates residues 1-86 of the predicted protein. casein lytic proteinase B2 (CLPB2)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: protein metabolic process%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-2 (InterPro:IPR013093)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C Chaperonin clpA/B (InterPro:IPR001270)%2C Clp%2C N-terminal (InterPro:IPR004176)%3B BEST Arabidopsis thaliana protein match is: heat shock protein 101 (TAIR:AT1G74310.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). | Chr4 | + | View |
| Capsella rubella | Carub.0007s2753 | PTHR11638//PTHR11638:SF116 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED | scaffold_7 | - | View |