Gene family expansion analysis

Gene family information

Gene count gene family 18
Total coding gene count 3,667,693

Keywords

Organisms

Organism	Total genes	Genes in family	Percentage total	Percentage family	Ratio family vs. total
Arabidopsis lyrata	31,073	0	0.85%	0%	0
Arabidopsis thaliana	27,655	0	0.75%	0%	0
Capsella rubella	27,682	0	0.75%	0%	0
Cardamine hirsuta	29,458	0	0.8%	0%	0
Brassica carinata	97,149	0	2.65%	0%	0
Brassica oleracea	61,279	0	1.67%	0%	0
Brassica napus	108,190	0	2.95%	0%	0
Brassica rapa	46,721	0	1.27%	0%	0
Schrenkiella parvula	26,847	0	0.73%	0%	0
Eutrema salsugineum	26,351	0	0.72%	0%	0
Aethionema arabicum	24,932	0	0.68%	0%	0
Tarenaya hassleriana	27,398	0	0.75%	0%	0
Carica papaya	27,768	0	0.76%	0%	0
Corchorus olitorius	35,704	16	0.97%	88.89%	91.64
Theobroma cacao	27,379	0	0.75%	0%	0
Gossypium hirsutum	75,376	0	2.06%	0%	0
Gossypium raimondii	37,505	0	1.02%	0%	0
Durio zibethinus	34,943	1	0.95%	5.56%	5.85
Acer truncatum	28,438	0	0.78%	0%	0
Citrus clementina	24,533	1	0.67%	5.56%	8.3
Eucalyptus grandis	36,349	0	0.99%	0%	0
Punica granatum	23,231	0	0.63%	0%	0
Corylus avellana	27,791	0	0.76%	0%	0
Carpinus fangiana	27,379	0	0.75%	0%	0
Carya illinoinensis	32,267	0	0.88%	0%	0
Quercus lobata	39,366	0	1.07%	0%	0
Cucumis melo	29,980	0	0.82%	0%	0
Cucumis sativus L.	24,317	0	0.66%	0%	0
Citrullus lanatus	22,545	0	0.61%	0%	0
Sechium edule	28,237	0	0.77%	0%	0
Fragaria x ananassa	108,087	0	2.95%	0%	0
Fragaria vesca	34,006	0	0.93%	0%	0
Rosa chinensis	45,469	0	1.24%	0%	0
Malus domestica	45,116	0	1.23%	0%	0
Prunus persica	26,873	0	0.73%	0%	0
Cannabis sativa	24,962	0	0.68%	0%	0
Medicago truncatula	50,894	0	1.39%	0%	0
Trifolium pratense	39,948	0	1.09%	0%	0
Pisum sativum	44,756	0	1.22%	0%	0
Cicer arietinum L.	31,358	0	0.85%	0%	0
Lotus japonicus	28,251	0	0.77%	0%	0
Glycine max	52,872	0	1.44%	0%	0
Phaseolus vulgaris	27,433	0	0.75%	0%	0
Vigna mungo	32,729	0	0.89%	0%	0
Lupinus albus	38,258	0	1.04%	0%	0
Arachis hypogaea	67,124	0	1.83%	0%	0
Manihot esculenta	32,805	0	0.89%	0%	0
Sapria himalayana	55,162	0	1.5%	0%	0
Populus trichocarpa	34,699	0	0.95%	0%	0
Salix brachista	30,209	0	0.82%	0%	0
Tripterygium wilfordii	30,703	0	0.84%	0%	0
Vitis vinifera	26,346	0	0.72%	0%	0
Rhododendron simsii	32,999	0	0.9%	0%	0
Vaccinium macrocarpon	22,836	0	0.62%	0%	0
Actinidia chinensis	40,466	0	1.1%	0%	0
Camellia sinensis var. sinensis	50,525	0	1.38%	0%	0
Davidia involucrata	42,554	0	1.16%	0%	0
Hydrangea macrophylla	32,222	0	0.88%	0%	0
Erythranthe guttata	28,140	0	0.77%	0%	0
Striga asiatica	33,423	0	0.91%	0%	0
Salvia bowleyana	43,958	0	1.2%	0%	0
Utricularia gibba	29,666	0	0.81%	0%	0
Avicennia marina	23,331	0	0.64%	0%	0
Olea europaea	50,684	0	1.38%	0%	0
Capsicum annuum	35,884	0	0.98%	0%	0
Solanum lycopersicum	34,075	0	0.93%	0%	0
Solanum pennellii	44,965	0	1.23%	0%	0
Solanum tuberosum	39,028	0	1.06%	0%	0
Nicotiana tabacum	69,500	0	1.89%	0%	0
Petunia axillaris	32,928	0	0.9%	0%	0
Coffea canephora	25,574	0	0.7%	0%	0
Erigeron canadensis	45,483	0	1.24%	0%	0
Helianthus annuus	52,243	0	1.42%	0%	0
Lactuca sativa	38,910	0	1.06%	0%	0
Daucus carota	32,113	0	0.88%	0%	0
Lonicera japonica	33,939	0	0.93%	0%	0
Beta vulgaris	24,255	0	0.66%	0%	0
Chenopodium quinoa	44,776	0	1.22%	0%	0
Amaranthus hybridus	23,819	0	0.65%	0%	0
Selenicereus undatus	31,522	0	0.86%	0%	0
Simmondsia chinensis	23,490	0	0.64%	0%	0
Trochodendron aralioides	35,328	0	0.96%	0%	0
Nelumbo nucifera	46,712	0	1.27%	0%	0
Aquilegia oxysepala	25,571	0	0.7%	0%	0
Papaver somniferum	61,433	0	1.67%	0%	0
Ceratophyllum demersum	25,323	0	0.69%	0%	0
Magnolia biondii	41,181	0	1.12%	0%	0
Oryza sativa ssp. japonica	35,489	0	0.97%	0%	0
Zea mays	39,756	0	1.08%	0%	0
Vanilla planifolia	29,167	0	0.8%	0%	0
Amborella trichopoda	26,846	0	0.73%	0%	0
Sequoiadendron giganteum	41,631	0	1.14%	0%	0
Selaginella moellendorffii	22,285	0	0.61%	0%	0
Anthoceros agrestis	25,846	0	0.7%	0%	0
Marchantia polymorpha	19,287	0	0.53%	0%	0
Physcomitrium patens	32,926	0	0.9%	0%	0
Chara braunii	34,718	0	0.95%	0%	0
Chlamydomonas reinhardtii	17,741	0	0.48%	0%	0
Micromonas commoda	10,103	0	0.28%	0%	0
Prasinoderma coloniale	7,139	0	0.19%	0%	0

Phylogenetic clades

Clade	Num species	Total genes	Genes in family	Percentage total	Percentage family	Ratio family vs. total
Arabidopsis	2	58,728	0	1.6%	0%	0
Camelineae	3	86,410	0	2.36%	0%	0
Brassica	4	313,339	0	8.54%	0%	0
Brassicaceae	11	507,337	0	13.83%	0%	0
Brassicales	13	562,503	0	15.34%	0%	0
Gossypium	2	112,881	0	3.08%	0%	0
Malvaceae	5	210,907	17	5.75%	94.44%	16.42
Sapindales	2	52,971	1	1.44%	5.56%	3.86
Myrtales	2	59,580	0	1.62%	0%	0
Malvids	22	885,961	18	24.16%	100%	4.14
Betulaceae	2	55,170	0	1.5%	0%	0
Fagales	4	126,803	0	3.46%	0%	0
Cucumis	2	54,297	0	1.48%	0%	0
Benincaseae	3	76,842	0	2.1%	0%	0
Cucurbitaceae	4	105,079	0	2.86%	0%	0
Fragaria	2	142,093	0	3.87%	0%	0
Rosoideae	3	187,562	0	5.11%	0%	0
Amygdaloideae	2	71,989	0	1.96%	0%	0
Rosaceae	5	259,551	0	7.08%	0%	0
Rosales	6	284,513	0	7.76%	0%	0
Trifolieae	2	90,842	0	2.48%	0%	0
IRL_clade	4	166,956	0	4.55%	0%	0
Hologalegina	5	195,207	0	5.32%	0%	0
Phaseoleae	3	113,034	0	3.08%	0%	0
NPAAA_clade	8	308,241	0	8.4%	0%	0
Saliceae	2	64,908	0	1.77%	0%	0
Malpighiales	4	152,875	0	4.17%	0%	0
Fabids	29	1,113,596	0	30.36%	0%	0
Rosids	52	2,025,903	18	55.24%	100%	1.81
Ericaceae	2	55,835	0	1.52%	0%	0
Ericales	4	146,826	0	4%	0%	0
Cornales	2	74,776	0	2.04%	0%	0
Lamiales	6	209,202	0	5.7%	0%	0
Solanum	3	118,068	0	3.22%	0%	0
Solanoideae	4	153,952	0	4.2%	0%	0
Solanaceae	6	256,380	0	6.99%	0%	0
Lamiids	13	491,156	0	13.39%	0%	0
Asteroideae	2	97,726	0	2.66%	0%	0
Asteraceae	3	136,636	0	3.73%	0%	0
Campanulids	5	202,688	0	5.53%	0%	0
Asterids	24	915,446	0	24.96%	0%	0
Chenopodiaceae	2	69,031	0	1.88%	0%	0
Caryophyllales	5	147,862	0	4.03%	0%	0
Pentapetalae	81	3,089,211	18	84.23%	100%	1.19
Ranunculales	2	87,004	0	2.37%	0%	0
Poaceae	2	75,245	0	2.05%	0%	0
Liliopsida	3	104,412	0	2.85%	0%	0
Mesangiospermae	90	3,429,171	18	93.5%	100%	1.07
Magnoliopsida	91	3,456,017	18	94.23%	100%	1.06
Spermatophyta	92	3,497,648	18	95.36%	100%	1.05
Tracheophyta	93	3,519,933	18	95.97%	100%	1.04
MossesLiverworts	2	52,213	0	1.42%	0%	0
Bryophyta	3	78,059	0	2.13%	0%	0
Embryophyta	96	3,597,992	18	98.1%	100%	1.02
Streptophytina	97	3,632,710	18	99.05%	100%	1.01
Chlorophyta	2	27,844	0	0.76%	0%	0
Viridiplantae	100	3,667,693	18	100%	100%	1

Gene family expansion analysis

Gene family information

Keywords

Organisms

Phylogenetic clades

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