Gene family expansion analysis

Gene family information

  • Gene count gene family 294
  • Total coding gene count 3,667,693

Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis lyrata31,07330.85%1.02%1.2
Arabidopsis thaliana27,65560.75%2.04%2.72
Capsella rubella27,68230.75%1.02%1.36
Cardamine hirsuta29,45830.8%1.02%1.28
Brassica carinata97,14992.65%3.06%1.15
Brassica oleracea61,27951.67%1.7%1.02
Brassica napus108,190102.95%3.4%1.15
Brassica rapa46,72151.27%1.7%1.34
Schrenkiella parvula26,84730.73%1.02%1.4
Eutrema salsugineum26,35130.72%1.02%1.42
Aethionema arabicum24,93230.68%1.02%1.5
Tarenaya hassleriana27,39840.75%1.36%1.81
Carica papaya27,76820.76%0.68%0.89
Corchorus olitorius35,70420.97%0.68%0.7
Theobroma cacao27,37920.75%0.68%0.91
Gossypium hirsutum75,37652.06%1.7%0.83
Gossypium raimondii37,50531.02%1.02%1
Durio zibethinus34,94320.95%0.68%0.72
Acer truncatum28,43820.78%0.68%0.87
Citrus clementina24,53320.67%0.68%1.01
Eucalyptus grandis36,34920.99%0.68%0.69
Punica granatum23,23120.63%0.68%1.08
Corylus avellana27,79120.76%0.68%0.89
Carpinus fangiana27,37920.75%0.68%0.91
Carya illinoinensis32,26730.88%1.02%1.16
Quercus lobata39,36621.07%0.68%0.64
Cucumis melo29,98010.82%0.34%0.41
Cucumis sativus L.24,31710.66%0.34%0.52
Citrullus lanatus22,54510.61%0.34%0.56
Sechium edule28,23710.77%0.34%0.44
Fragaria x ananassa108,08782.95%2.72%0.92
Fragaria vesca34,00620.93%0.68%0.73
Rosa chinensis45,46921.24%0.68%0.55
Malus domestica45,11621.23%0.68%0.55
Prunus persica26,87320.73%0.68%0.93
Cannabis sativa24,96210.68%0.34%0.5
Medicago truncatula50,89421.39%0.68%0.49
Trifolium pratense39,94831.09%1.02%0.94
Pisum sativum44,75621.22%0.68%0.56
Cicer arietinum L.31,35820.85%0.68%0.8
Lotus japonicus28,25110.77%0.34%0.44
Glycine max52,87241.44%1.36%0.94
Phaseolus vulgaris27,43320.75%0.68%0.91
Vigna mungo32,72920.89%0.68%0.76
Lupinus albus38,25831.04%1.02%0.98
Arachis hypogaea67,12441.83%1.36%0.74
Manihot esculenta32,80530.89%1.02%1.15
Sapria himalayana55,16221.5%0.68%0.45
Populus trichocarpa34,69930.95%1.02%1.07
Salix brachista30,20930.82%1.02%1.24
Tripterygium wilfordii30,70320.84%0.68%0.81
Vitis vinifera26,34620.72%0.68%0.94
Rhododendron simsii32,99930.9%1.02%1.13
Vaccinium macrocarpon22,83630.62%1.02%1.65
Actinidia chinensis40,46661.1%2.04%1.85
Camellia sinensis var. sinensis50,52531.38%1.02%0.74
Davidia involucrata42,55431.16%1.02%0.88
Hydrangea macrophylla32,22230.88%1.02%1.16
Erythranthe guttata28,14020.77%0.68%0.88
Striga asiatica33,42330.91%1.02%1.12
Salvia bowleyana43,95831.2%1.02%0.85
Utricularia gibba29,66630.81%1.02%1.26
Avicennia marina23,33110.64%0.34%0.53
Olea europaea50,68451.38%1.7%1.23
Capsicum annuum35,88430.98%1.02%1.04
Solanum lycopersicum34,07540.93%1.36%1.46
Solanum pennellii44,96531.23%1.02%0.83
Solanum tuberosum39,02831.06%1.02%0.96
Nicotiana tabacum69,50051.89%1.7%0.9
Petunia axillaris32,92820.9%0.68%0.76
Coffea canephora25,57410.7%0.34%0.49
Erigeron canadensis45,48321.24%0.68%0.55
Helianthus annuus52,24321.42%0.68%0.48
Lactuca sativa38,91021.06%0.68%0.64
Daucus carota32,11320.88%0.68%0.77
Lonicera japonica33,93920.93%0.68%0.73
Beta vulgaris24,25530.66%1.02%1.55
Chenopodium quinoa44,77681.22%2.72%2.23
Amaranthus hybridus23,81940.65%1.36%2.09
Selenicereus undatus31,52220.86%0.68%0.79
Simmondsia chinensis23,49040.64%1.36%2.13
Trochodendron aralioides35,32850.96%1.7%1.77
Nelumbo nucifera46,71251.27%1.7%1.34
Aquilegia oxysepala25,57120.7%0.68%0.97
Papaver somniferum61,43351.67%1.7%1.02
Ceratophyllum demersum25,32340.69%1.36%1.97
Magnolia biondii41,18121.12%0.68%0.61
Oryza sativa ssp. japonica35,48930.97%1.02%1.05
Zea mays39,75631.08%1.02%0.94
Vanilla planifolia29,16730.8%1.02%1.28
Amborella trichopoda26,84610.73%0.34%0.47
Sequoiadendron giganteum41,63121.14%0.68%0.6
Selaginella moellendorffii22,28510.61%0.34%0.56
Anthoceros agrestis25,84660.7%2.04%2.91
Marchantia polymorpha19,28720.53%0.68%1.28
Physcomitrium patens32,92690.9%3.06%3.4
Chara braunii34,71800.95%0%0
Chlamydomonas reinhardtii17,74100.48%0%0
Micromonas commoda10,10300.28%0%0
Prasinoderma coloniale7,13900.19%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis258,72891.6%3.06%1.91
Camelineae386,410122.36%4.08%1.73
Brassica4313,339298.54%9.86%1.15
Brassicaceae11507,3375313.83%18.03%1.3
Brassicales13562,5035915.34%20.07%1.31
Gossypium2112,88183.08%2.72%0.88
Malvaceae5210,907145.75%4.76%0.83
Sapindales252,97141.44%1.36%0.94
Myrtales259,58041.62%1.36%0.84
Malvids22885,9618124.16%27.55%1.14
Betulaceae255,17041.5%1.36%0.91
Fagales4126,80393.46%3.06%0.88
Cucumis254,29721.48%0.68%0.46
Benincaseae376,84232.1%1.02%0.49
Cucurbitaceae4105,07942.86%1.36%0.48
Fragaria2142,093103.87%3.4%0.88
Rosoideae3187,562125.11%4.08%0.8
Amygdaloideae271,98941.96%1.36%0.69
Rosaceae5259,551167.08%5.44%0.77
Rosales6284,513177.76%5.78%0.74
Trifolieae290,84252.48%1.7%0.69
IRL_clade4166,95694.55%3.06%0.67
Hologalegina5195,207105.32%3.4%0.64
Phaseoleae3113,03483.08%2.72%0.88
NPAAA_clade8308,241188.4%6.12%0.73
Saliceae264,90861.77%2.04%1.15
Malpighiales4152,875114.17%3.74%0.9
Fabids291,113,5966830.36%23.13%0.76
Rosids522,025,90315155.24%51.36%0.93
Ericaceae255,83561.52%2.04%1.34
Ericales4146,826154%5.1%1.28
Cornales274,77662.04%2.04%1
Lamiales6209,202175.7%5.78%1.01
Solanum3118,068103.22%3.4%1.06
Solanoideae4153,952134.2%4.42%1.05
Solanaceae6256,380206.99%6.8%0.97
Lamiids13491,1563813.39%12.93%0.97
Asteroideae297,72642.66%1.36%0.51
Asteraceae3136,63663.73%2.04%0.55
Campanulids5202,688105.53%3.4%0.61
Asterids24915,4466924.96%23.47%0.94
Chenopodiaceae269,031111.88%3.74%1.99
Caryophyllales5147,862214.03%7.14%1.77
Pentapetalae813,089,21124184.23%81.97%0.97
Ranunculales287,00472.37%2.38%1
Poaceae275,24562.05%2.04%1
Liliopsida3104,41292.85%3.06%1.07
Mesangiospermae903,429,17127393.5%92.86%0.99
Magnoliopsida913,456,01727494.23%93.2%0.99
Spermatophyta923,497,64827695.36%93.88%0.98
Tracheophyta933,519,93327795.97%94.22%0.98
MossesLiverworts252,213111.42%3.74%2.63
Bryophyta378,059172.13%5.78%2.71
Embryophyta963,597,99229498.1%100%1.02
Streptophytina973,632,71029499.05%100%1.01
Chlorophyta227,84400.76%0%0
Viridiplantae1003,667,693294100%100%1