Gene family expansion analysis

Gene family information

  • Gene count gene family 4493
  • Total coding gene count 3,667,693

Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis lyrata31,073240.85%0.53%0.62
Arabidopsis thaliana27,655200.75%0.45%0.6
Capsella rubella27,682230.75%0.51%0.68
Cardamine hirsuta29,458200.8%0.45%0.56
Brassica carinata97,149662.65%1.47%0.55
Brassica oleracea61,279291.67%0.65%0.39
Brassica napus108,190832.95%1.85%0.63
Brassica rapa46,721311.27%0.69%0.54
Schrenkiella parvula26,847200.73%0.45%0.62
Eutrema salsugineum26,351220.72%0.49%0.68
Aethionema arabicum24,932220.68%0.49%0.72
Tarenaya hassleriana27,398290.75%0.65%0.87
Carica papaya27,768150.76%0.33%0.43
Corchorus olitorius35,704170.97%0.38%0.39
Theobroma cacao27,379160.75%0.36%0.48
Gossypium hirsutum75,376692.06%1.54%0.75
Gossypium raimondii37,505331.02%0.73%0.72
Durio zibethinus34,943340.95%0.76%0.8
Acer truncatum28,438180.78%0.4%0.51
Citrus clementina24,533190.67%0.42%0.63
Eucalyptus grandis36,349150.99%0.33%0.33
Punica granatum23,231160.63%0.36%0.57
Corylus avellana27,791190.76%0.42%0.55
Carpinus fangiana27,379100.75%0.22%0.29
Carya illinoinensis32,267260.88%0.58%0.66
Quercus lobata39,366231.07%0.51%0.48
Cucumis melo29,980190.82%0.42%0.51
Cucumis sativus L.24,317170.66%0.38%0.58
Citrullus lanatus22,545170.61%0.38%0.62
Sechium edule28,237230.77%0.51%0.66
Fragaria x ananassa108,087622.95%1.38%0.47
Fragaria vesca34,006180.93%0.4%0.43
Rosa chinensis45,469331.24%0.73%0.59
Malus domestica45,116271.23%0.6%0.49
Prunus persica26,873170.73%0.38%0.52
Cannabis sativa24,962190.68%0.42%0.62
Medicago truncatula50,894221.39%0.49%0.35
Trifolium pratense39,948191.09%0.42%0.39
Pisum sativum44,756191.22%0.42%0.34
Cicer arietinum L.31,358140.85%0.31%0.36
Lotus japonicus28,251180.77%0.4%0.52
Glycine max52,872371.44%0.82%0.57
Phaseolus vulgaris27,433190.75%0.42%0.56
Vigna mungo32,729190.89%0.42%0.47
Lupinus albus38,258351.04%0.78%0.75
Arachis hypogaea67,124441.83%0.98%0.54
Manihot esculenta32,805360.89%0.8%0.9
Sapria himalayana55,1622,2081.5%49.14%32.76
Populus trichocarpa34,699280.95%0.62%0.65
Salix brachista30,209330.82%0.73%0.89
Tripterygium wilfordii30,703230.84%0.51%0.61
Vitis vinifera26,346200.72%0.45%0.63
Rhododendron simsii32,999210.9%0.47%0.52
Vaccinium macrocarpon22,836210.62%0.47%0.76
Actinidia chinensis40,466211.1%0.47%0.43
Camellia sinensis var. sinensis50,525461.38%1.02%0.74
Davidia involucrata42,554191.16%0.42%0.36
Hydrangea macrophylla32,222220.88%0.49%0.56
Erythranthe guttata28,140200.77%0.45%0.58
Striga asiatica33,423150.91%0.33%0.36
Salvia bowleyana43,958141.2%0.31%0.26
Utricularia gibba29,66620.81%0.04%0.05
Avicennia marina23,331240.64%0.53%0.83
Olea europaea50,684401.38%0.89%0.64
Capsicum annuum35,884180.98%0.4%0.41
Solanum lycopersicum34,075220.93%0.49%0.53
Solanum pennellii44,965191.23%0.42%0.34
Solanum tuberosum39,028211.06%0.47%0.44
Nicotiana tabacum69,500391.89%0.87%0.46
Petunia axillaris32,928190.9%0.42%0.47
Coffea canephora25,574170.7%0.38%0.54
Erigeron canadensis45,483191.24%0.42%0.34
Helianthus annuus52,243321.42%0.71%0.5
Lactuca sativa38,910181.06%0.4%0.38
Daucus carota32,113170.88%0.38%0.43
Lonicera japonica33,939130.93%0.29%0.31
Beta vulgaris24,255190.66%0.42%0.64
Chenopodium quinoa44,776261.22%0.58%0.48
Amaranthus hybridus23,81980.65%0.18%0.28
Selenicereus undatus31,522160.86%0.36%0.42
Simmondsia chinensis23,490170.64%0.38%0.59
Trochodendron aralioides35,328350.96%0.78%0.81
Nelumbo nucifera46,712191.27%0.42%0.33
Aquilegia oxysepala25,571150.7%0.33%0.47
Papaver somniferum61,433291.67%0.65%0.39
Ceratophyllum demersum25,323160.69%0.36%0.52
Magnolia biondii41,18161.12%0.13%0.12
Oryza sativa ssp. japonica35,489200.97%0.45%0.46
Zea mays39,756301.08%0.67%0.62
Vanilla planifolia29,167190.8%0.42%0.53
Amborella trichopoda26,84680.73%0.18%0.25
Sequoiadendron giganteum41,631161.14%0.36%0.32
Selaginella moellendorffii22,285120.61%0.27%0.44
Anthoceros agrestis25,846100.7%0.22%0.31
Marchantia polymorpha19,287160.53%0.36%0.68
Physcomitrium patens32,926300.9%0.67%0.74
Chara braunii34,71880.95%0.18%0.19
Chlamydomonas reinhardtii17,741140.48%0.31%0.65
Micromonas commoda10,10390.28%0.2%0.71
Prasinoderma coloniale7,139110.19%0.24%1.26

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis258,728441.6%0.98%0.61
Camelineae386,410672.36%1.49%0.63
Brassica4313,3392098.54%4.65%0.54
Brassicaceae11507,33736013.83%8.01%0.58
Brassicales13562,50340415.34%8.99%0.59
Gossypium2112,8811023.08%2.27%0.74
Malvaceae5210,9071695.75%3.76%0.65
Sapindales252,971371.44%0.82%0.57
Myrtales259,580311.62%0.69%0.43
Malvids22885,96164124.16%14.27%0.59
Betulaceae255,170291.5%0.65%0.43
Fagales4126,803783.46%1.74%0.5
Cucumis254,297361.48%0.8%0.54
Benincaseae376,842532.1%1.18%0.56
Cucurbitaceae4105,079762.86%1.69%0.59
Fragaria2142,093803.87%1.78%0.46
Rosoideae3187,5621135.11%2.52%0.49
Amygdaloideae271,989441.96%0.98%0.5
Rosaceae5259,5511577.08%3.49%0.49
Rosales6284,5131767.76%3.92%0.51
Trifolieae290,842412.48%0.91%0.37
IRL_clade4166,956744.55%1.65%0.36
Hologalegina5195,207925.32%2.05%0.39
Phaseoleae3113,034753.08%1.67%0.54
NPAAA_clade8308,2411678.4%3.72%0.44
Saliceae264,908611.77%1.36%0.77
Malpighiales4152,8752,3054.17%51.3%12.3
Fabids291,113,5962,90430.36%64.63%2.13
Rosids522,025,9033,56555.24%79.35%1.44
Ericaceae255,835421.52%0.93%0.61
Ericales4146,8261094%2.43%0.61
Cornales274,776412.04%0.91%0.45
Lamiales6209,2021155.7%2.56%0.45
Solanum3118,068623.22%1.38%0.43
Solanoideae4153,952804.2%1.78%0.42
Solanaceae6256,3801386.99%3.07%0.44
Lamiids13491,15627013.39%6.01%0.45
Asteroideae297,726512.66%1.14%0.43
Asteraceae3136,636693.73%1.54%0.41
Campanulids5202,688995.53%2.2%0.4
Asterids24915,44651924.96%11.55%0.46
Chenopodiaceae269,031451.88%1%0.53
Caryophyllales5147,862864.03%1.91%0.47
Pentapetalae813,089,2114,17084.23%92.81%1.1
Ranunculales287,004442.37%0.98%0.41
Poaceae275,245502.05%1.11%0.54
Liliopsida3104,412692.85%1.54%0.54
Mesangiospermae903,429,1714,35993.5%97.02%1.04
Magnoliopsida913,456,0174,36794.23%97.2%1.03
Spermatophyta923,497,6484,38395.36%97.55%1.02
Tracheophyta933,519,9334,39595.97%97.82%1.02
MossesLiverworts252,213461.42%1.02%0.72
Bryophyta378,059562.13%1.25%0.59
Embryophyta963,597,9924,45198.1%99.07%1.01
Streptophytina973,632,7104,45999.05%99.24%1
Chlorophyta227,844230.76%0.51%0.67
Viridiplantae1003,667,6934,493100%100%1