Gene family expansion analysis
Gene family information
- Gene count gene family 4563
- Total coding gene count 3,667,693
Keywords
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Arabidopsis lyrata | 31,073 | 44 | 0.85% | 0.96% | 1.13 |
| Arabidopsis thaliana | 27,655 | 42 | 0.75% | 0.92% | 1.23 |
| Capsella rubella | 27,682 | 47 | 0.75% | 1.03% | 1.37 |
| Cardamine hirsuta | 29,458 | 52 | 0.8% | 1.14% | 1.43 |
| Brassica carinata | 97,149 | 139 | 2.65% | 3.05% | 1.15 |
| Brassica oleracea | 61,279 | 71 | 1.67% | 1.56% | 0.93 |
| Brassica napus | 108,190 | 153 | 2.95% | 3.35% | 1.14 |
| Brassica rapa | 46,721 | 64 | 1.27% | 1.4% | 1.1 |
| Schrenkiella parvula | 26,847 | 33 | 0.73% | 0.72% | 0.99 |
| Eutrema salsugineum | 26,351 | 36 | 0.72% | 0.79% | 1.1 |
| Aethionema arabicum | 24,932 | 47 | 0.68% | 1.03% | 1.51 |
| Tarenaya hassleriana | 27,398 | 34 | 0.75% | 0.75% | 1 |
| Carica papaya | 27,768 | 28 | 0.76% | 0.61% | 0.8 |
| Corchorus olitorius | 35,704 | 55 | 0.97% | 1.21% | 1.25 |
| Theobroma cacao | 27,379 | 48 | 0.75% | 1.05% | 1.4 |
| Gossypium hirsutum | 75,376 | 78 | 2.06% | 1.71% | 0.83 |
| Gossypium raimondii | 37,505 | 43 | 1.02% | 0.94% | 0.92 |
| Durio zibethinus | 34,943 | 43 | 0.95% | 0.94% | 0.99 |
| Acer truncatum | 28,438 | 43 | 0.78% | 0.94% | 1.21 |
| Citrus clementina | 24,533 | 51 | 0.67% | 1.12% | 1.67 |
| Eucalyptus grandis | 36,349 | 72 | 0.99% | 1.58% | 1.6 |
| Punica granatum | 23,231 | 32 | 0.63% | 0.7% | 1.11 |
| Corylus avellana | 27,791 | 37 | 0.76% | 0.81% | 1.07 |
| Carpinus fangiana | 27,379 | 30 | 0.75% | 0.66% | 0.88 |
| Carya illinoinensis | 32,267 | 42 | 0.88% | 0.92% | 1.05 |
| Quercus lobata | 39,366 | 73 | 1.07% | 1.6% | 1.5 |
| Cucumis melo | 29,980 | 30 | 0.82% | 0.66% | 0.8 |
| Cucumis sativus L. | 24,317 | 29 | 0.66% | 0.64% | 0.97 |
| Citrullus lanatus | 22,545 | 23 | 0.61% | 0.5% | 0.82 |
| Sechium edule | 28,237 | 26 | 0.77% | 0.57% | 0.74 |
| Fragaria x ananassa | 108,087 | 129 | 2.95% | 2.83% | 0.96 |
| Fragaria vesca | 34,006 | 44 | 0.93% | 0.96% | 1.03 |
| Rosa chinensis | 45,469 | 53 | 1.24% | 1.16% | 0.94 |
| Malus domestica | 45,116 | 71 | 1.23% | 1.56% | 1.27 |
| Prunus persica | 26,873 | 45 | 0.73% | 0.99% | 1.36 |
| Cannabis sativa | 24,962 | 30 | 0.68% | 0.66% | 0.97 |
| Medicago truncatula | 50,894 | 52 | 1.39% | 1.14% | 0.82 |
| Trifolium pratense | 39,948 | 50 | 1.09% | 1.1% | 1.01 |
| Pisum sativum | 44,756 | 50 | 1.22% | 1.1% | 0.9 |
| Cicer arietinum L. | 31,358 | 28 | 0.85% | 0.61% | 0.72 |
| Lotus japonicus | 28,251 | 48 | 0.77% | 1.05% | 1.36 |
| Glycine max | 52,872 | 75 | 1.44% | 1.64% | 1.14 |
| Phaseolus vulgaris | 27,433 | 34 | 0.75% | 0.75% | 1 |
| Vigna mungo | 32,729 | 41 | 0.89% | 0.9% | 1.01 |
| Lupinus albus | 38,258 | 35 | 1.04% | 0.77% | 0.74 |
| Arachis hypogaea | 67,124 | 91 | 1.83% | 1.99% | 1.09 |
| Manihot esculenta | 32,805 | 44 | 0.89% | 0.96% | 1.08 |
| Sapria himalayana | 55,162 | 7 | 1.5% | 0.15% | 0.1 |
| Populus trichocarpa | 34,699 | 48 | 0.95% | 1.05% | 1.11 |
| Salix brachista | 30,209 | 48 | 0.82% | 1.05% | 1.28 |
| Tripterygium wilfordii | 30,703 | 36 | 0.84% | 0.79% | 0.94 |
| Vitis vinifera | 26,346 | 57 | 0.72% | 1.25% | 1.74 |
| Rhododendron simsii | 32,999 | 70 | 0.9% | 1.53% | 1.7 |
| Vaccinium macrocarpon | 22,836 | 48 | 0.62% | 1.05% | 1.69 |
| Actinidia chinensis | 40,466 | 44 | 1.1% | 0.96% | 0.87 |
| Camellia sinensis var. sinensis | 50,525 | 73 | 1.38% | 1.6% | 1.16 |
| Davidia involucrata | 42,554 | 51 | 1.16% | 1.12% | 0.97 |
| Hydrangea macrophylla | 32,222 | 61 | 0.88% | 1.34% | 1.52 |
| Erythranthe guttata | 28,140 | 46 | 0.77% | 1.01% | 1.31 |
| Striga asiatica | 33,423 | 24 | 0.91% | 0.53% | 0.58 |
| Salvia bowleyana | 43,958 | 45 | 1.2% | 0.99% | 0.83 |
| Utricularia gibba | 29,666 | 33 | 0.81% | 0.72% | 0.89 |
| Avicennia marina | 23,331 | 22 | 0.64% | 0.48% | 0.75 |
| Olea europaea | 50,684 | 46 | 1.38% | 1.01% | 0.73 |
| Capsicum annuum | 35,884 | 6 | 0.98% | 0.13% | 0.13 |
| Solanum lycopersicum | 34,075 | 61 | 0.93% | 1.34% | 1.44 |
| Solanum pennellii | 44,965 | 59 | 1.23% | 1.29% | 1.05 |
| Solanum tuberosum | 39,028 | 56 | 1.06% | 1.23% | 1.16 |
| Nicotiana tabacum | 69,500 | 99 | 1.89% | 2.17% | 1.15 |
| Petunia axillaris | 32,928 | 69 | 0.9% | 1.51% | 1.68 |
| Coffea canephora | 25,574 | 54 | 0.7% | 1.18% | 1.69 |
| Erigeron canadensis | 45,483 | 35 | 1.24% | 0.77% | 0.62 |
| Helianthus annuus | 52,243 | 51 | 1.42% | 1.12% | 0.79 |
| Lactuca sativa | 38,910 | 38 | 1.06% | 0.83% | 0.78 |
| Daucus carota | 32,113 | 37 | 0.88% | 0.81% | 0.92 |
| Lonicera japonica | 33,939 | 47 | 0.93% | 1.03% | 1.11 |
| Beta vulgaris | 24,255 | 33 | 0.66% | 0.72% | 1.09 |
| Chenopodium quinoa | 44,776 | 59 | 1.22% | 1.29% | 1.06 |
| Amaranthus hybridus | 23,819 | 27 | 0.65% | 0.59% | 0.91 |
| Selenicereus undatus | 31,522 | 20 | 0.86% | 0.44% | 0.51 |
| Simmondsia chinensis | 23,490 | 29 | 0.64% | 0.64% | 1 |
| Trochodendron aralioides | 35,328 | 35 | 0.96% | 0.77% | 0.8 |
| Nelumbo nucifera | 46,712 | 35 | 1.27% | 0.77% | 0.61 |
| Aquilegia oxysepala | 25,571 | 31 | 0.7% | 0.68% | 0.97 |
| Papaver somniferum | 61,433 | 93 | 1.67% | 2.04% | 1.22 |
| Ceratophyllum demersum | 25,323 | 16 | 0.69% | 0.35% | 0.51 |
| Magnolia biondii | 41,181 | 52 | 1.12% | 1.14% | 1.02 |
| Oryza sativa ssp. japonica | 35,489 | 36 | 0.97% | 0.79% | 0.81 |
| Zea mays | 39,756 | 39 | 1.08% | 0.85% | 0.79 |
| Vanilla planifolia | 29,167 | 27 | 0.8% | 0.59% | 0.74 |
| Amborella trichopoda | 26,846 | 47 | 0.73% | 1.03% | 1.41 |
| Sequoiadendron giganteum | 41,631 | 94 | 1.14% | 2.06% | 1.81 |
| Selaginella moellendorffii | 22,285 | 14 | 0.61% | 0.31% | 0.51 |
| Anthoceros agrestis | 25,846 | 3 | 0.7% | 0.07% | 0.1 |
| Marchantia polymorpha | 19,287 | 8 | 0.53% | 0.18% | 0.34 |
| Physcomitrium patens | 32,926 | 9 | 0.9% | 0.2% | 0.22 |
| Chara braunii | 34,718 | 2 | 0.95% | 0.04% | 0.04 |
| Chlamydomonas reinhardtii | 17,741 | 9 | 0.48% | 0.2% | 0.42 |
| Micromonas commoda | 10,103 | 6 | 0.28% | 0.13% | 0.46 |
| Prasinoderma coloniale | 7,139 | 3 | 0.19% | 0.07% | 0.37 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Arabidopsis | 2 | 58,728 | 86 | 1.6% | 1.88% | 1.18 |
| Camelineae | 3 | 86,410 | 133 | 2.36% | 2.91% | 1.23 |
| Brassica | 4 | 313,339 | 427 | 8.54% | 9.36% | 1.1 |
| Brassicaceae | 11 | 507,337 | 728 | 13.83% | 15.95% | 1.15 |
| Brassicales | 13 | 562,503 | 790 | 15.34% | 17.31% | 1.13 |
| Gossypium | 2 | 112,881 | 121 | 3.08% | 2.65% | 0.86 |
| Malvaceae | 5 | 210,907 | 267 | 5.75% | 5.85% | 1.02 |
| Sapindales | 2 | 52,971 | 94 | 1.44% | 2.06% | 1.43 |
| Myrtales | 2 | 59,580 | 104 | 1.62% | 2.28% | 1.41 |
| Malvids | 22 | 885,961 | 1,255 | 24.16% | 27.5% | 1.14 |
| Betulaceae | 2 | 55,170 | 67 | 1.5% | 1.47% | 0.98 |
| Fagales | 4 | 126,803 | 182 | 3.46% | 3.99% | 1.15 |
| Cucumis | 2 | 54,297 | 59 | 1.48% | 1.29% | 0.87 |
| Benincaseae | 3 | 76,842 | 82 | 2.1% | 1.8% | 0.86 |
| Cucurbitaceae | 4 | 105,079 | 108 | 2.86% | 2.37% | 0.83 |
| Fragaria | 2 | 142,093 | 173 | 3.87% | 3.79% | 0.98 |
| Rosoideae | 3 | 187,562 | 226 | 5.11% | 4.95% | 0.97 |
| Amygdaloideae | 2 | 71,989 | 116 | 1.96% | 2.54% | 1.3 |
| Rosaceae | 5 | 259,551 | 342 | 7.08% | 7.5% | 1.06 |
| Rosales | 6 | 284,513 | 372 | 7.76% | 8.15% | 1.05 |
| Trifolieae | 2 | 90,842 | 102 | 2.48% | 2.24% | 0.9 |
| IRL_clade | 4 | 166,956 | 180 | 4.55% | 3.94% | 0.87 |
| Hologalegina | 5 | 195,207 | 228 | 5.32% | 5% | 0.94 |
| Phaseoleae | 3 | 113,034 | 150 | 3.08% | 3.29% | 1.07 |
| NPAAA_clade | 8 | 308,241 | 378 | 8.4% | 8.28% | 0.99 |
| Saliceae | 2 | 64,908 | 96 | 1.77% | 2.1% | 1.19 |
| Malpighiales | 4 | 152,875 | 147 | 4.17% | 3.22% | 0.77 |
| Fabids | 29 | 1,113,596 | 1,349 | 30.36% | 29.56% | 0.97 |
| Rosids | 52 | 2,025,903 | 2,661 | 55.24% | 58.32% | 1.06 |
| Ericaceae | 2 | 55,835 | 118 | 1.52% | 2.59% | 1.7 |
| Ericales | 4 | 146,826 | 235 | 4% | 5.15% | 1.29 |
| Cornales | 2 | 74,776 | 112 | 2.04% | 2.45% | 1.2 |
| Lamiales | 6 | 209,202 | 216 | 5.7% | 4.73% | 0.83 |
| Solanum | 3 | 118,068 | 176 | 3.22% | 3.86% | 1.2 |
| Solanoideae | 4 | 153,952 | 182 | 4.2% | 3.99% | 0.95 |
| Solanaceae | 6 | 256,380 | 350 | 6.99% | 7.67% | 1.1 |
| Lamiids | 13 | 491,156 | 620 | 13.39% | 13.59% | 1.01 |
| Asteroideae | 2 | 97,726 | 86 | 2.66% | 1.88% | 0.71 |
| Asteraceae | 3 | 136,636 | 124 | 3.73% | 2.72% | 0.73 |
| Campanulids | 5 | 202,688 | 208 | 5.53% | 4.56% | 0.82 |
| Asterids | 24 | 915,446 | 1,175 | 24.96% | 25.75% | 1.03 |
| Chenopodiaceae | 2 | 69,031 | 92 | 1.88% | 2.02% | 1.07 |
| Caryophyllales | 5 | 147,862 | 168 | 4.03% | 3.68% | 0.91 |
| Pentapetalae | 81 | 3,089,211 | 4,004 | 84.23% | 87.75% | 1.04 |
| Ranunculales | 2 | 87,004 | 124 | 2.37% | 2.72% | 1.15 |
| Poaceae | 2 | 75,245 | 75 | 2.05% | 1.64% | 0.8 |
| Liliopsida | 3 | 104,412 | 102 | 2.85% | 2.24% | 0.79 |
| Mesangiospermae | 90 | 3,429,171 | 4,368 | 93.5% | 95.73% | 1.02 |
| Magnoliopsida | 91 | 3,456,017 | 4,415 | 94.23% | 96.76% | 1.03 |
| Spermatophyta | 92 | 3,497,648 | 4,509 | 95.36% | 98.82% | 1.04 |
| Tracheophyta | 93 | 3,519,933 | 4,523 | 95.97% | 99.12% | 1.03 |
| MossesLiverworts | 2 | 52,213 | 17 | 1.42% | 0.37% | 0.26 |
| Bryophyta | 3 | 78,059 | 20 | 2.13% | 0.44% | 0.21 |
| Embryophyta | 96 | 3,597,992 | 4,543 | 98.1% | 99.56% | 1.01 |
| Streptophytina | 97 | 3,632,710 | 4,545 | 99.05% | 99.61% | 1.01 |
| Chlorophyta | 2 | 27,844 | 15 | 0.76% | 0.33% | 0.43 |
| Viridiplantae | 100 | 3,667,693 | 4,563 | 100% | 100% | 1 |