Gene family expansion analysis
Gene family information
- Gene count gene family 5404
- Total coding gene count 3,667,693
Keywords
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Arabidopsis lyrata | 31,073 | 41 | 0.85% | 0.76% | 0.89 |
| Arabidopsis thaliana | 27,655 | 38 | 0.75% | 0.7% | 0.93 |
| Capsella rubella | 27,682 | 37 | 0.75% | 0.68% | 0.91 |
| Cardamine hirsuta | 29,458 | 41 | 0.8% | 0.76% | 0.95 |
| Brassica carinata | 97,149 | 108 | 2.65% | 2% | 0.75 |
| Brassica oleracea | 61,279 | 58 | 1.67% | 1.07% | 0.64 |
| Brassica napus | 108,190 | 117 | 2.95% | 2.17% | 0.74 |
| Brassica rapa | 46,721 | 55 | 1.27% | 1.02% | 0.8 |
| Schrenkiella parvula | 26,847 | 36 | 0.73% | 0.67% | 0.92 |
| Eutrema salsugineum | 26,351 | 37 | 0.72% | 0.68% | 0.94 |
| Aethionema arabicum | 24,932 | 40 | 0.68% | 0.74% | 1.09 |
| Tarenaya hassleriana | 27,398 | 45 | 0.75% | 0.83% | 1.11 |
| Carica papaya | 27,768 | 35 | 0.76% | 0.65% | 0.86 |
| Corchorus olitorius | 35,704 | 41 | 0.97% | 0.76% | 0.78 |
| Theobroma cacao | 27,379 | 45 | 0.75% | 0.83% | 1.11 |
| Gossypium hirsutum | 75,376 | 134 | 2.06% | 2.48% | 1.2 |
| Gossypium raimondii | 37,505 | 64 | 1.02% | 1.18% | 1.16 |
| Durio zibethinus | 34,943 | 72 | 0.95% | 1.33% | 1.4 |
| Acer truncatum | 28,438 | 46 | 0.78% | 0.85% | 1.09 |
| Citrus clementina | 24,533 | 48 | 0.67% | 0.89% | 1.33 |
| Eucalyptus grandis | 36,349 | 76 | 0.99% | 1.41% | 1.42 |
| Punica granatum | 23,231 | 40 | 0.63% | 0.74% | 1.17 |
| Corylus avellana | 27,791 | 52 | 0.76% | 0.96% | 1.26 |
| Carpinus fangiana | 27,379 | 43 | 0.75% | 0.8% | 1.07 |
| Carya illinoinensis | 32,267 | 71 | 0.88% | 1.31% | 1.49 |
| Quercus lobata | 39,366 | 63 | 1.07% | 1.17% | 1.09 |
| Cucumis melo | 29,980 | 38 | 0.82% | 0.7% | 0.85 |
| Cucumis sativus L. | 24,317 | 42 | 0.66% | 0.78% | 1.18 |
| Citrullus lanatus | 22,545 | 39 | 0.61% | 0.72% | 1.18 |
| Sechium edule | 28,237 | 51 | 0.77% | 0.94% | 1.22 |
| Fragaria x ananassa | 108,087 | 138 | 2.95% | 2.55% | 0.86 |
| Fragaria vesca | 34,006 | 43 | 0.93% | 0.8% | 0.86 |
| Rosa chinensis | 45,469 | 48 | 1.24% | 0.89% | 0.72 |
| Malus domestica | 45,116 | 76 | 1.23% | 1.41% | 1.15 |
| Prunus persica | 26,873 | 46 | 0.73% | 0.85% | 1.16 |
| Cannabis sativa | 24,962 | 44 | 0.68% | 0.81% | 1.19 |
| Medicago truncatula | 50,894 | 67 | 1.39% | 1.24% | 0.89 |
| Trifolium pratense | 39,948 | 74 | 1.09% | 1.37% | 1.26 |
| Pisum sativum | 44,756 | 64 | 1.22% | 1.18% | 0.97 |
| Cicer arietinum L. | 31,358 | 45 | 0.85% | 0.83% | 0.98 |
| Lotus japonicus | 28,251 | 46 | 0.77% | 0.85% | 1.1 |
| Glycine max | 52,872 | 95 | 1.44% | 1.76% | 1.22 |
| Phaseolus vulgaris | 27,433 | 54 | 0.75% | 1% | 1.33 |
| Vigna mungo | 32,729 | 58 | 0.89% | 1.07% | 1.2 |
| Lupinus albus | 38,258 | 75 | 1.04% | 1.39% | 1.34 |
| Arachis hypogaea | 67,124 | 105 | 1.83% | 1.94% | 1.06 |
| Manihot esculenta | 32,805 | 68 | 0.89% | 1.26% | 1.42 |
| Sapria himalayana | 55,162 | 7 | 1.5% | 0.13% | 0.09 |
| Populus trichocarpa | 34,699 | 67 | 0.95% | 1.24% | 1.31 |
| Salix brachista | 30,209 | 61 | 0.82% | 1.13% | 1.38 |
| Tripterygium wilfordii | 30,703 | 47 | 0.84% | 0.87% | 1.04 |
| Vitis vinifera | 26,346 | 48 | 0.72% | 0.89% | 1.24 |
| Rhododendron simsii | 32,999 | 68 | 0.9% | 1.26% | 1.4 |
| Vaccinium macrocarpon | 22,836 | 45 | 0.62% | 0.83% | 1.34 |
| Actinidia chinensis | 40,466 | 77 | 1.1% | 1.42% | 1.29 |
| Camellia sinensis var. sinensis | 50,525 | 106 | 1.38% | 1.96% | 1.42 |
| Davidia involucrata | 42,554 | 76 | 1.16% | 1.41% | 1.22 |
| Hydrangea macrophylla | 32,222 | 33 | 0.88% | 0.61% | 0.69 |
| Erythranthe guttata | 28,140 | 48 | 0.77% | 0.89% | 1.16 |
| Striga asiatica | 33,423 | 63 | 0.91% | 1.17% | 1.29 |
| Salvia bowleyana | 43,958 | 58 | 1.2% | 1.07% | 0.89 |
| Utricularia gibba | 29,666 | 3 | 0.81% | 0.06% | 0.07 |
| Avicennia marina | 23,331 | 45 | 0.64% | 0.83% | 1.3 |
| Olea europaea | 50,684 | 63 | 1.38% | 1.17% | 0.85 |
| Capsicum annuum | 35,884 | 49 | 0.98% | 0.91% | 0.93 |
| Solanum lycopersicum | 34,075 | 51 | 0.93% | 0.94% | 1.01 |
| Solanum pennellii | 44,965 | 50 | 1.23% | 0.93% | 0.76 |
| Solanum tuberosum | 39,028 | 54 | 1.06% | 1% | 0.94 |
| Nicotiana tabacum | 69,500 | 113 | 1.89% | 2.09% | 1.11 |
| Petunia axillaris | 32,928 | 51 | 0.9% | 0.94% | 1.04 |
| Coffea canephora | 25,574 | 45 | 0.7% | 0.83% | 1.19 |
| Erigeron canadensis | 45,483 | 47 | 1.24% | 0.87% | 0.7 |
| Helianthus annuus | 52,243 | 82 | 1.42% | 1.52% | 1.07 |
| Lactuca sativa | 38,910 | 49 | 1.06% | 0.91% | 0.86 |
| Daucus carota | 32,113 | 50 | 0.88% | 0.93% | 1.06 |
| Lonicera japonica | 33,939 | 72 | 0.93% | 1.33% | 1.43 |
| Beta vulgaris | 24,255 | 51 | 0.66% | 0.94% | 1.42 |
| Chenopodium quinoa | 44,776 | 68 | 1.22% | 1.26% | 1.03 |
| Amaranthus hybridus | 23,819 | 35 | 0.65% | 0.65% | 1 |
| Selenicereus undatus | 31,522 | 35 | 0.86% | 0.65% | 0.76 |
| Simmondsia chinensis | 23,490 | 37 | 0.64% | 0.68% | 1.06 |
| Trochodendron aralioides | 35,328 | 72 | 0.96% | 1.33% | 1.39 |
| Nelumbo nucifera | 46,712 | 80 | 1.27% | 1.48% | 1.17 |
| Aquilegia oxysepala | 25,571 | 39 | 0.7% | 0.72% | 1.03 |
| Papaver somniferum | 61,433 | 73 | 1.67% | 1.35% | 0.81 |
| Ceratophyllum demersum | 25,323 | 45 | 0.69% | 0.83% | 1.2 |
| Magnolia biondii | 41,181 | 50 | 1.12% | 0.93% | 0.83 |
| Oryza sativa ssp. japonica | 35,489 | 51 | 0.97% | 0.94% | 0.97 |
| Zea mays | 39,756 | 57 | 1.08% | 1.05% | 0.97 |
| Vanilla planifolia | 29,167 | 49 | 0.8% | 0.91% | 1.14 |
| Amborella trichopoda | 26,846 | 36 | 0.73% | 0.67% | 0.92 |
| Sequoiadendron giganteum | 41,631 | 97 | 1.14% | 1.79% | 1.57 |
| Selaginella moellendorffii | 22,285 | 28 | 0.61% | 0.52% | 0.85 |
| Anthoceros agrestis | 25,846 | 19 | 0.7% | 0.35% | 0.5 |
| Marchantia polymorpha | 19,287 | 23 | 0.53% | 0.43% | 0.81 |
| Physcomitrium patens | 32,926 | 28 | 0.9% | 0.52% | 0.58 |
| Chara braunii | 34,718 | 2 | 0.95% | 0.04% | 0.04 |
| Chlamydomonas reinhardtii | 17,741 | 1 | 0.48% | 0.02% | 0.04 |
| Micromonas commoda | 10,103 | 1 | 0.28% | 0.02% | 0.07 |
| Prasinoderma coloniale | 7,139 | 0 | 0.19% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Arabidopsis | 2 | 58,728 | 79 | 1.6% | 1.46% | 0.91 |
| Camelineae | 3 | 86,410 | 116 | 2.36% | 2.15% | 0.91 |
| Brassica | 4 | 313,339 | 338 | 8.54% | 6.25% | 0.73 |
| Brassicaceae | 11 | 507,337 | 608 | 13.83% | 11.25% | 0.81 |
| Brassicales | 13 | 562,503 | 688 | 15.34% | 12.73% | 0.83 |
| Gossypium | 2 | 112,881 | 198 | 3.08% | 3.66% | 1.19 |
| Malvaceae | 5 | 210,907 | 356 | 5.75% | 6.59% | 1.15 |
| Sapindales | 2 | 52,971 | 94 | 1.44% | 1.74% | 1.21 |
| Myrtales | 2 | 59,580 | 116 | 1.62% | 2.15% | 1.33 |
| Malvids | 22 | 885,961 | 1,254 | 24.16% | 23.21% | 0.96 |
| Betulaceae | 2 | 55,170 | 95 | 1.5% | 1.76% | 1.17 |
| Fagales | 4 | 126,803 | 229 | 3.46% | 4.24% | 1.23 |
| Cucumis | 2 | 54,297 | 80 | 1.48% | 1.48% | 1 |
| Benincaseae | 3 | 76,842 | 119 | 2.1% | 2.2% | 1.05 |
| Cucurbitaceae | 4 | 105,079 | 170 | 2.86% | 3.15% | 1.1 |
| Fragaria | 2 | 142,093 | 181 | 3.87% | 3.35% | 0.87 |
| Rosoideae | 3 | 187,562 | 229 | 5.11% | 4.24% | 0.83 |
| Amygdaloideae | 2 | 71,989 | 122 | 1.96% | 2.26% | 1.15 |
| Rosaceae | 5 | 259,551 | 351 | 7.08% | 6.5% | 0.92 |
| Rosales | 6 | 284,513 | 395 | 7.76% | 7.31% | 0.94 |
| Trifolieae | 2 | 90,842 | 141 | 2.48% | 2.61% | 1.05 |
| IRL_clade | 4 | 166,956 | 250 | 4.55% | 4.63% | 1.02 |
| Hologalegina | 5 | 195,207 | 296 | 5.32% | 5.48% | 1.03 |
| Phaseoleae | 3 | 113,034 | 207 | 3.08% | 3.83% | 1.24 |
| NPAAA_clade | 8 | 308,241 | 503 | 8.4% | 9.31% | 1.11 |
| Saliceae | 2 | 64,908 | 128 | 1.77% | 2.37% | 1.34 |
| Malpighiales | 4 | 152,875 | 203 | 4.17% | 3.76% | 0.9 |
| Fabids | 29 | 1,113,596 | 1,727 | 30.36% | 31.96% | 1.05 |
| Rosids | 52 | 2,025,903 | 3,029 | 55.24% | 56.05% | 1.01 |
| Ericaceae | 2 | 55,835 | 113 | 1.52% | 2.09% | 1.38 |
| Ericales | 4 | 146,826 | 296 | 4% | 5.48% | 1.37 |
| Cornales | 2 | 74,776 | 109 | 2.04% | 2.02% | 0.99 |
| Lamiales | 6 | 209,202 | 280 | 5.7% | 5.18% | 0.91 |
| Solanum | 3 | 118,068 | 155 | 3.22% | 2.87% | 0.89 |
| Solanoideae | 4 | 153,952 | 204 | 4.2% | 3.77% | 0.9 |
| Solanaceae | 6 | 256,380 | 368 | 6.99% | 6.81% | 0.97 |
| Lamiids | 13 | 491,156 | 693 | 13.39% | 12.82% | 0.96 |
| Asteroideae | 2 | 97,726 | 129 | 2.66% | 2.39% | 0.9 |
| Asteraceae | 3 | 136,636 | 178 | 3.73% | 3.29% | 0.88 |
| Campanulids | 5 | 202,688 | 300 | 5.53% | 5.55% | 1 |
| Asterids | 24 | 915,446 | 1,398 | 24.96% | 25.87% | 1.04 |
| Chenopodiaceae | 2 | 69,031 | 119 | 1.88% | 2.2% | 1.17 |
| Caryophyllales | 5 | 147,862 | 226 | 4.03% | 4.18% | 1.04 |
| Pentapetalae | 81 | 3,089,211 | 4,653 | 84.23% | 86.1% | 1.02 |
| Ranunculales | 2 | 87,004 | 112 | 2.37% | 2.07% | 0.87 |
| Poaceae | 2 | 75,245 | 108 | 2.05% | 2% | 0.98 |
| Liliopsida | 3 | 104,412 | 157 | 2.85% | 2.91% | 1.02 |
| Mesangiospermae | 90 | 3,429,171 | 5,169 | 93.5% | 95.65% | 1.02 |
| Magnoliopsida | 91 | 3,456,017 | 5,205 | 94.23% | 96.32% | 1.02 |
| Spermatophyta | 92 | 3,497,648 | 5,302 | 95.36% | 98.11% | 1.03 |
| Tracheophyta | 93 | 3,519,933 | 5,330 | 95.97% | 98.63% | 1.03 |
| MossesLiverworts | 2 | 52,213 | 51 | 1.42% | 0.94% | 0.66 |
| Bryophyta | 3 | 78,059 | 70 | 2.13% | 1.3% | 0.61 |
| Embryophyta | 96 | 3,597,992 | 5,400 | 98.1% | 99.93% | 1.02 |
| Streptophytina | 97 | 3,632,710 | 5,402 | 99.05% | 99.96% | 1.01 |
| Chlorophyta | 2 | 27,844 | 2 | 0.76% | 0.04% | 0.05 |
| Viridiplantae | 100 | 3,667,693 | 5,404 | 100% | 100% | 1 |