Functional clusters
Information
- Type InterPro
- Description E3 ubiquitin-protein ligase RNF5/RNF185-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB02 | 5 | CH_bca_1064 | 3 | 4 | 0.0000111289 |
| Lotus japonicus | chr1 | 5 | CH_lja_118 | 4 | 5 | 0.00000000548898 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_309 | 4 | 7 | 0.0000000339097 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_525 | 3 | 4 | 0.0000107766 |
| Magnolia biondii | Chr19 | 5 | CH_mbi_101 | 5 | 5 | 0.00000000000000233693 |
| Medicago truncatula | chr1 | 5 | CH_mtr_785 | 4 | 25 | 0.00000476887 |
| Medicago truncatula | chr2 | 5 | CH_mtr_966 | 3 | 7 | 0.0000495869 |
| Petunia axillaris | Peaxi162Scf00206 | 5 | CH_pax_346 | 3 | 4 | 0.000016626 |
| Petunia axillaris | Peaxi162Scf00019 | 5 | CH_pax_347 | 3 | 4 | 0.000016626 |
| Pisum sativum | chr2LG1 | 5 | CH_psa_9 | 8 | 8 | 2.13139e-24 |
| Quercus lobata | 11 | 5 | CH_qlo_609 | 5 | 22 | 0.00000000279937 |
| Solanum tuberosum | ST4.03ch12 | 5 | CH_stu_843 | 3 | 12 | 0.00048411 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_300 | 3 | 3 | 0.0000024583 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_301 | 3 | 3 | 0.0000024583 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1064 | 3 | 4 | 0.0000111289 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_743 | 3 | 5 | 0.0000398856 |
| Lotus japonicus | chr1 | 6 | CH_lja_118 | 4 | 5 | 0.00000000548898 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_309 | 4 | 7 | 0.0000000339097 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_525 | 3 | 4 | 0.0000107766 |
| Magnolia biondii | Chr19 | 6 | CH_mbi_101 | 5 | 5 | 0.00000000000000233693 |
| Medicago truncatula | chr1 | 6 | CH_mtr_785 | 4 | 25 | 0.00000476887 |
| Medicago truncatula | chr2 | 6 | CH_mtr_966 | 3 | 7 | 0.0000495869 |
| Petunia axillaris | Peaxi162Scf00206 | 6 | CH_pax_346 | 3 | 4 | 0.000016626 |
| Petunia axillaris | Peaxi162Scf00019 | 6 | CH_pax_347 | 3 | 4 | 0.000016626 |
| Pisum sativum | chr2LG1 | 6 | CH_psa_9 | 8 | 8 | 2.13139e-24 |
| Quercus lobata | 11 | 6 | CH_qlo_609 | 5 | 22 | 0.00000000279937 |
| Solanum tuberosum | ST4.03ch12 | 6 | CH_stu_843 | 3 | 12 | 0.00048411 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_300 | 3 | 3 | 0.0000024583 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_301 | 3 | 3 | 0.0000024583 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |