Functional clusters
Information
- Type InterPro
- Description Ancient conserved domain protein family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_615 | 2 | 2 | 0.000601633 |
| Capsicum annuum | PGAv.1.6.scaffold209 | 5 | CH_can_475 | 3 | 5 | 0.0000225073 |
| Davidia involucrata | GWHABJS00000009 | 5 | CH_din_302 | 3 | 3 | 0.000000825433 |
| Magnolia biondii | Chr19 | 5 | CH_mbi_274 | 4 | 8 | 0.00000000302977 |
| Micromonas commoda | Chr_01 | 5 | CH_mco_42 | 2 | 2 | 0.000197961 |
| Medicago truncatula | chr6 | 5 | CH_mtr_1452 | 3 | 28 | 0.00099226 |
| Nelumbo nucifera | chr6 | 5 | CH_nnu_615 | 2 | 2 | 0.000722526 |
| Quercus lobata | 9 | 5 | CH_qlo_296 | 6 | 11 | 0.00000000000000653921 |
| Simmondsia chinensis | GWHAASQ00000013 | 5 | CH_sci_545 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1234 | 3 | 3 | 0.000000587373 |
| Schrenkiella parvula | ch7-4 | 5 | CH_spa_216 | 3 | 10 | 0.000062407 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_59 | 5 | 6 | 0.000000000000682618 |
| Vigna mungo | CM024075.1 | 5 | CH_vmu_209 | 3 | 3 | 0.000000751521 |
| Vanilla planifolia | CM028156.1 | 5 | CH_vpl_53 | 5 | 18 | 0.0000000000401786 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_615 | 2 | 2 | 0.000601633 |
| Capsicum annuum | PGAv.1.6.scaffold209 | 6 | CH_can_475 | 3 | 5 | 0.0000225073 |
| Davidia involucrata | GWHABJS00000009 | 6 | CH_din_302 | 3 | 3 | 0.000000825433 |
| Fragaria x ananassa | Fvb7-2 | 6 | CH_fan_545 | 3 | 3 | 0.00000399052 |
| Magnolia biondii | Chr19 | 6 | CH_mbi_274 | 4 | 8 | 0.00000000302977 |
| Micromonas commoda | Chr_01 | 6 | CH_mco_42 | 2 | 2 | 0.000197961 |
| Medicago truncatula | chr6 | 6 | CH_mtr_1452 | 3 | 28 | 0.00099226 |
| Nelumbo nucifera | chr6 | 6 | CH_nnu_615 | 2 | 2 | 0.000722526 |
| Quercus lobata | 9 | 6 | CH_qlo_296 | 6 | 11 | 0.00000000000000653921 |
| Simmondsia chinensis | GWHAASQ00000013 | 6 | CH_sci_545 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1234 | 3 | 3 | 0.000000587373 |
| Schrenkiella parvula | ch7-4 | 6 | CH_spa_216 | 3 | 10 | 0.000062407 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_59 | 5 | 6 | 0.000000000000682618 |
| Vigna mungo | CM024075.1 | 6 | CH_vmu_209 | 3 | 3 | 0.000000751521 |
| Vanilla planifolia | CM028156.1 | 6 | CH_vpl_53 | 5 | 18 | 0.0000000000401786 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |