Functional clusters
Information
- Type InterPro
- Description Cullin
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_305 | 3 | 3 | 0.00000143772 |
| Avicennia marina | ScioBoG_3008_HRSCAF_3015 | 5 | CH_ama_66 | 3 | 3 | 0.00000133821 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_378 | 3 | 8 | 0.000154262 |
| Brassica carinata | ChrB03 | 5 | CH_bca_305 | 4 | 4 | 0.00000000105381 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_570 | 5 | 29 | 0.000000382784 |
| Chara braunii | BFEA01000414 | 5 | CH_cbr_307 | 2 | 2 | 0.000431562 |
| Citrus clementina | scaffold_9 | 5 | CH_ccl_209 | 4 | 4 | 0.000000000546543 |
| Carica papaya | supercontig_128 | 5 | CH_cpa_606 | 2 | 2 | 0.000570396 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_370 | 3 | 4 | 0.0000116719 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_93 | 5 | 5 | 0.000000000000429198 |
| Durio zibethinus | NW_019167904.1 | 5 | CH_dzi_290 | 3 | 3 | 0.00000367354 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_192 | 4 | 4 | 0.00000000115947 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_365 | 3 | 3 | 0.00000289498 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_88 | 6 | 10 | 0.0000000000000268235 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_293 | 4 | 4 | 0.00000000083878 |
| Lotus japonicus | chr4 | 5 | CH_lja_275 | 3 | 4 | 0.00000171786 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_576 | 3 | 4 | 0.00000258188 |
| Magnolia biondii | Chr19 | 5 | CH_mbi_80 | 6 | 9 | 1.07229e-16 |
| Malus domestica | Chr04 | 5 | CH_mdo_397 | 4 | 7 | 0.000000022178 |
| Malus domestica | Chr06 | 5 | CH_mdo_779 | 3 | 5 | 0.0000208916 |
| Medicago truncatula | chr5 | 5 | CH_mtr_183 | 8 | 29 | 0.0000000000000102026 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_161 | 4 | 10 | 0.0000000232144 |
| Prunus persica | Pp05 | 5 | CH_ppe_109 | 6 | 8 | 6.72292e-16 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_465 | 5 | 37 | 0.0000000992738 |
| Papaver somniferum | NC_039365.1 | 5 | CH_pso_928 | 4 | 43 | 0.0000996341 |
| Quercus lobata | 11 | 5 | CH_qlo_850 | 4 | 13 | 0.000000294893 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_315 | 5 | 18 | 0.00000000484753 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1306 | 3 | 3 | 0.00000129578 |
| Sapria himalayana | scaffold7_18583372 | 5 | CH_shi_524 | 2 | 3 | 0.000514599 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_30 | 10 | 18 | 4.7307e-25 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_14 | 10 | 18 | 1.95054e-26 |
| Selenicereus undatus | Scaffold_33675 | 5 | CH_sun_58 | 6 | 68 | 0.00000000842991 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_141 | 5 | 11 | 0.00000000381521 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_168 | 4 | 4 | 0.000000011524 |
| Vanilla planifolia | CM028151.1 | 5 | CH_vpl_317 | 3 | 9 | 0.0000240557 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_305 | 3 | 3 | 0.00000143772 |
| Avicennia marina | ScioBoG_3008_HRSCAF_3015 | 6 | CH_ama_66 | 3 | 3 | 0.00000133821 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_378 | 3 | 8 | 0.000154262 |
| Brassica carinata | ChrB03 | 6 | CH_bca_305 | 4 | 4 | 0.00000000105381 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_570 | 5 | 29 | 0.000000382784 |
| Chara braunii | BFEA01000414 | 6 | CH_cbr_307 | 2 | 2 | 0.000431562 |
| Citrus clementina | scaffold_9 | 6 | CH_ccl_209 | 4 | 4 | 0.000000000546543 |
| Carica papaya | supercontig_128 | 6 | CH_cpa_606 | 2 | 2 | 0.000570396 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_370 | 3 | 4 | 0.0000116719 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_93 | 5 | 5 | 0.000000000000429198 |
| Durio zibethinus | NW_019167904.1 | 6 | CH_dzi_290 | 3 | 3 | 0.00000367354 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_192 | 4 | 4 | 0.00000000115947 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_365 | 3 | 3 | 0.00000289498 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_553 | 3 | 3 | 0.00000433256 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_88 | 6 | 10 | 0.0000000000000268235 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_293 | 4 | 4 | 0.00000000083878 |
| Lotus japonicus | chr4 | 6 | CH_lja_275 | 3 | 4 | 0.00000171786 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_576 | 3 | 4 | 0.00000258188 |
| Magnolia biondii | Chr19 | 6 | CH_mbi_80 | 6 | 9 | 1.07229e-16 |
| Malus domestica | Chr04 | 6 | CH_mdo_397 | 4 | 7 | 0.000000022178 |
| Malus domestica | Chr06 | 6 | CH_mdo_779 | 3 | 5 | 0.0000208916 |
| Medicago truncatula | chr5 | 6 | CH_mtr_183 | 8 | 29 | 0.0000000000000102026 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_161 | 4 | 10 | 0.0000000232144 |
| Prunus persica | Pp05 | 6 | CH_ppe_109 | 6 | 8 | 6.72292e-16 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_465 | 5 | 37 | 0.0000000992738 |
| Papaver somniferum | NC_039365.1 | 6 | CH_pso_928 | 4 | 43 | 0.0000996341 |
| Quercus lobata | 11 | 6 | CH_qlo_850 | 4 | 13 | 0.000000294893 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_315 | 5 | 18 | 0.00000000484753 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1306 | 3 | 3 | 0.00000129578 |
| Sapria himalayana | scaffold7_18583372 | 6 | CH_shi_524 | 2 | 3 | 0.000514599 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_30 | 10 | 18 | 4.7307e-25 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_14 | 10 | 18 | 1.95054e-26 |
| Selenicereus undatus | Scaffold_33675 | 6 | CH_sun_58 | 6 | 68 | 0.00000000842991 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_141 | 5 | 11 | 0.00000000381521 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_168 | 4 | 4 | 0.000000011524 |
| Vanilla planifolia | CM028151.1 | 6 | CH_vpl_317 | 3 | 9 | 0.0000240557 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |