Functional clusters

Information

  • Type InterPro
  • Description Glutathione S-transferases Tau, C-terminal alpha helical domain, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 5 CH_aar_233 3 3 0.0000120986
Acer truncatum chr4 5 CH_acertr_176 5 10 0.00000000375656
Acer truncatum chr8 5 CH_acertr_54 6 6 0.000000000000011601
Arabidopsis lyrata scaffold_4 5 CH_aly_26 9 16 8.32703e-20
Arabidopsis lyrata scaffold_2 5 CH_aly_35 7 7 1.32629e-17
Aquilegia oxysepala CHR07 5 CH_aox_196 4 10 0.000000991617
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 5 CH_arhy_100 9 10 9.72369e-21
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 5 CH_arhy_193 7 9 0.0000000000000208515
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 5 CH_arhy_91 11 22 1.08512e-21
Brassica carinata ChrC07 5 CH_bca_125 8 33 0.00000000000042148
Brassica carinata ChrB03 5 CH_bca_506 4 4 0.0000000593362
Brassica napus A07 5 CH_bna_179 5 5 0.0000000000214036
Brassica oleracea C4 5 CH_bol_141 5 10 0.00000000123925
Brassica oleracea C5 5 CH_bol_462 3 3 0.0000146462
Camellia sinensis var. sinensis Chr6 5 CH_camsi_469 4 4 0.0000000562862
Coffea canephora chr5 5 CH_ccan_16 7 44 5.78835e-16
Citrus clementina scaffold_4 5 CH_ccl_204 7 23 0.00000000042302
Carpinus fangiana Cfa03 5 CH_cfa_374 3 3 0.0000349319
Carpinus fangiana Cfa01 5 CH_cfa_447 3 4 0.000139615
Carpinus fangiana scaffold13 5 CH_cfa_448 3 4 0.000139615
Carpinus fangiana Cfa07 5 CH_cfa_77 6 6 0.0000000000000332998
Cardamine hirsuta Chr2 5 CH_chi_452 3 3 0.0000428855
Cardamine hirsuta Chr4 5 CH_chi_58 8 13 5.52922e-17
Carya illinoinensis Chr10 5 CH_cil_129 6 6 0.000000000000192871
Citrullus lanatus CG_Chr05 5 CH_cla_100 4 8 0.000000104686
Chenopodium quinoa C_Quinoa_Scaffold_1675 5 CH_cqu_46 9 11 2.92342e-20
Chenopodium quinoa C_Quinoa_Scaffold_4082 5 CH_cqu_804 4 16 0.000279579
Cucumis sativus L. chr4 5 CH_csa_26 9 15 4.90778e-21
Daucus carota DCARv2_Chr8 5 CH_dca_198 4 5 0.0000000923692
Davidia involucrata GWHABJS00000013 5 CH_din_11 11 12 1.44749e-28
Davidia involucrata GWHABJS00000019 5 CH_din_439 4 14 0.0000377555
Eucalyptus grandis Chr06 5 CH_egr_115 11 14 7.16474e-24
Eucalyptus grandis Chr04 5 CH_egr_1223 3 3 0.000235131
Eucalyptus grandis Chr06 5 CH_egr_1224 3 3 0.000235131
Eucalyptus grandis Chr07 5 CH_egr_1225 3 3 0.000235131
Eucalyptus grandis Chr11 5 CH_egr_95 11 13 2.36913e-25
Eutrema salsugineum scaffold_10 5 CH_esa_40 7 8 8.07989e-17
Fragaria vesca Fvb4 5 CH_fve_437 4 8 0.00000391022
Gossypium hirsutum D02 5 CH_ghi_27 15 20 1.15157e-36
Gossypium hirsutum A04 5 CH_ghi_541 4 5 0.000000499063
Gossypium hirsutum A02 5 CH_ghi_82 9 9 1.0738e-22
Gossypium hirsutum A13 5 CH_ghi_895 3 3 0.0000947126
Glycine max Gm08 5 CH_gma_180 5 6 0.000000000242571
Glycine max Gm15 5 CH_gma_46 8 9 2.42027e-19
Gossypium raimondii Chr05 5 CH_gra_53 9 13 4.88939e-20
Gossypium raimondii Chr04 5 CH_gra_643 3 5 0.000570013
Helianthus annuus HanXRQChr06 5 CH_han_107 9 54 7.42486e-16
Hydrangea macrophylla Hma1.2p1_0198F.1 5 CH_hma_138 4 5 0.00000015031
Hydrangea macrophylla Hma1.2p1_0289F.1 5 CH_hma_487 3 4 0.000113933
Lotus japonicus chr5 5 CH_lja_28 7 7 1.32944e-16
Lotus japonicus chr4 5 CH_lja_387 3 3 0.0000647067
Lonicera japonica GWHAAZE00000001 5 CH_lonja_106 8 8 2.27228e-19
Lonicera japonica GWHAAZE00000006 5 CH_lonja_332 5 7 0.00000000277169
Lonicera japonica GWHAAZE00000001 5 CH_lonja_430 4 4 0.000000105159
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_281 6 39 0.0000000153595
Malus domestica Chr10 5 CH_mdo_383 4 4 0.0000000183121
Malus domestica Chr13 5 CH_mdo_793 3 3 0.0000247631
Manihot esculenta Chromosome11 5 CH_mes_110 7 9 0.0000000000000226076
Manihot esculenta Chromosome02 5 CH_mes_150 6 7 0.00000000000306679
Oryza sativa ssp. japonica chr10 5 CH_osa_2 22 30 4.97103e-57
Petunia axillaris Peaxi162Scf00000 5 CH_pax_187 4 4 0.0000000771274
Punica granatum NC_045133.1 5 CH_pgr_188 4 4 0.0000000222459
Punica granatum NC_045131.1 5 CH_pgr_380 3 3 0.0000247041
Prunus persica Pp04 5 CH_ppe_9 17 21 6.54947e-40
Papaver somniferum NC_039365.1 5 CH_pso_1243 3 7 0.000737323
Papaver somniferum NC_039367.1 5 CH_pso_549 5 27 0.000000589497
Populus trichocarpa Chr11 5 CH_ptr_108 8 18 0.000000000000026036
Populus trichocarpa Chr11 5 CH_ptr_213 5 6 0.00000000143987
Populus trichocarpa Chr08 5 CH_ptr_324 4 4 0.00000016965
Populus trichocarpa Chr01 5 CH_ptr_37 10 10 9.96136e-25
Quercus lobata 4 5 CH_qlo_29 20 49 2.74365e-37
Quercus lobata 3 5 CH_qlo_654 5 6 0.00000000871062
Quercus lobata 3 5 CH_qlo_69 17 58 4.15717e-28
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_94 9 12 2.11386e-20
Rhododendron simsii chr04 5 CH_rsi_128 8 15 7.22072e-16
Rhododendron simsii chr12 5 CH_rsi_71 9 10 1.16547e-21
Striga asiatica scaffold52 5 CH_sas_240 3 16 0.000656209
Sechium edule LG02 5 CH_sed_114 4 4 0.00000000527833
Sechium edule LG08 5 CH_sed_255 3 3 0.00000870365
Sechium edule LG03 5 CH_sed_347 3 5 0.0000869511
Sequoiadendron giganteum chr4 5 CH_sgi_2616 3 6 0.000876649
Selaginella moellendorffii scaffold_42 5 CH_smo_3 14 29 3.23034e-28
Solanum pennellii Spenn-ch09 5 CH_spe_2 19 23 2.27193e-49
Solanum pennellii Spenn-ch07 5 CH_spe_21 9 9 9.62939e-23
Trochodendron aralioides group17 5 CH_tar_118 5 6 0.0000000000574325
Trochodendron aralioides group6 5 CH_tar_186 4 4 0.0000000132933
Theobroma cacao Chromosome_3 5 CH_tca_379 4 5 0.00000124696
Theobroma cacao Chromosome_7 5 CH_tca_483 4 9 0.0000312534
Theobroma cacao Chromosome_4 5 CH_tca_9 18 21 3.77328e-44
Trifolium pratense Tp57577_TGAC_v2_scaf_359 5 CH_tpr_395 3 3 0.000013237
Tripterygium wilfordii NC_052239.1 5 CH_twi_28 7 8 2.23952e-17
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_106 5 5 0.000000000112642
Vigna mungo CM024070.1 5 CH_vmu_126 4 4 0.0000000121
Vitis vinifera chr5 5 CH_vvi_462 4 9 0.0000350014
Vitis vinifera chr19 5 CH_vvi_50 14 77 1.5929e-20
Vitis vinifera chr5 5 CH_vvi_730 3 4 0.000638722
Zea mays 9 5 CH_zma_136 4 4 0.0000000185998
Zea mays 1 5 CH_zma_15 9 12 7.63348e-22
Aethionema arabicum LG-4 6 CH_aar_233 3 3 0.0000120986
Acer truncatum chr4 6 CH_acertr_176 5 10 0.00000000375656
Acer truncatum chr8 6 CH_acertr_54 6 6 0.000000000000011601
Arabidopsis lyrata scaffold_4 6 CH_aly_26 9 16 8.32703e-20
Arabidopsis lyrata scaffold_2 6 CH_aly_35 7 7 1.32629e-17
Aquilegia oxysepala CHR07 6 CH_aox_196 4 10 0.000000991617
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 6 CH_arhy_100 9 10 9.72369e-21
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 6 CH_arhy_193 7 9 0.0000000000000208515
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 6 CH_arhy_91 11 22 1.08512e-21
Brassica carinata ChrC07 6 CH_bca_125 8 33 0.00000000000042148
Brassica carinata ChrB03 6 CH_bca_506 4 4 0.0000000593362
Brassica napus A07 6 CH_bna_179 5 5 0.0000000000214036
Brassica oleracea C4 6 CH_bol_141 5 10 0.00000000123925
Brassica oleracea C5 6 CH_bol_462 3 3 0.0000146462
Camellia sinensis var. sinensis Chr6 6 CH_camsi_469 4 4 0.0000000562862
Coffea canephora chr5 6 CH_ccan_16 7 44 5.78835e-16
Citrus clementina scaffold_4 6 CH_ccl_204 7 23 0.00000000042302
Carpinus fangiana Cfa03 6 CH_cfa_374 3 3 0.0000349319
Carpinus fangiana Cfa01 6 CH_cfa_447 3 4 0.000139615
Carpinus fangiana scaffold13 6 CH_cfa_448 3 4 0.000139615
Carpinus fangiana Cfa07 6 CH_cfa_77 6 6 0.0000000000000332998
Cardamine hirsuta Chr2 6 CH_chi_452 3 3 0.0000428855
Cardamine hirsuta Chr4 6 CH_chi_58 8 13 5.52922e-17
Carya illinoinensis Chr10 6 CH_cil_129 6 6 0.000000000000192871
Citrullus lanatus CG_Chr05 6 CH_cla_100 4 8 0.000000104686
Chenopodium quinoa C_Quinoa_Scaffold_1675 6 CH_cqu_46 9 11 2.92342e-20
Chenopodium quinoa C_Quinoa_Scaffold_4082 6 CH_cqu_804 4 16 0.000279579
Cucumis sativus L. chr4 6 CH_csa_26 9 15 4.90778e-21
Daucus carota DCARv2_Chr8 6 CH_dca_198 4 5 0.0000000923692
Davidia involucrata GWHABJS00000013 6 CH_din_11 11 12 1.44749e-28
Davidia involucrata GWHABJS00000019 6 CH_din_439 4 14 0.0000377555
Eucalyptus grandis Chr06 6 CH_egr_115 11 14 7.16474e-24
Eucalyptus grandis Chr04 6 CH_egr_1223 3 3 0.000235131
Eucalyptus grandis Chr06 6 CH_egr_1224 3 3 0.000235131
Eucalyptus grandis Chr07 6 CH_egr_1225 3 3 0.000235131
Eucalyptus grandis Chr11 6 CH_egr_95 11 13 2.36913e-25
Eutrema salsugineum scaffold_10 6 CH_esa_40 7 8 8.07989e-17
Fragaria x ananassa Fvb2-4 6 CH_fan_278 4 4 0.0000000285573
Fragaria x ananassa Fvb5-3 6 CH_fan_617 4 11 0.00000938675
Fragaria x ananassa Fvb5-2 6 CH_fan_748 3 3 0.0000406134
Fragaria x ananassa Fvb4-3 6 CH_fan_879 3 5 0.000162366
Fragaria vesca Fvb4 6 CH_fve_437 4 8 0.00000391022
Gossypium hirsutum D02 6 CH_ghi_27 15 20 1.15157e-36
Gossypium hirsutum A04 6 CH_ghi_541 4 5 0.000000499063
Gossypium hirsutum A02 6 CH_ghi_82 9 9 1.0738e-22
Gossypium hirsutum A13 6 CH_ghi_895 3 3 0.0000947126
Glycine max Gm08 6 CH_gma_180 5 6 0.000000000242571
Glycine max Gm15 6 CH_gma_46 8 9 2.42027e-19
Gossypium raimondii Chr05 6 CH_gra_53 9 13 4.88939e-20
Gossypium raimondii Chr04 6 CH_gra_643 3 5 0.000570013
Helianthus annuus HanXRQChr06 6 CH_han_107 9 54 7.42486e-16
Hydrangea macrophylla Hma1.2p1_0198F.1 6 CH_hma_138 4 5 0.00000015031
Hydrangea macrophylla Hma1.2p1_0289F.1 6 CH_hma_487 3 4 0.000113933
Lotus japonicus chr5 6 CH_lja_28 7 7 1.32944e-16
Lotus japonicus chr4 6 CH_lja_387 3 3 0.0000647067
Lonicera japonica GWHAAZE00000001 6 CH_lonja_106 8 8 2.27228e-19
Lonicera japonica GWHAAZE00000006 6 CH_lonja_332 5 7 0.00000000277169
Lonicera japonica GWHAAZE00000001 6 CH_lonja_430 4 4 0.000000105159
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_281 6 39 0.0000000153595
Malus domestica Chr10 6 CH_mdo_383 4 4 0.0000000183121
Malus domestica Chr13 6 CH_mdo_793 3 3 0.0000247631
Manihot esculenta Chromosome11 6 CH_mes_110 7 9 0.0000000000000226076
Manihot esculenta Chromosome02 6 CH_mes_150 6 7 0.00000000000306679
Oryza sativa ssp. japonica chr10 6 CH_osa_2 22 30 4.97103e-57
Petunia axillaris Peaxi162Scf00000 6 CH_pax_187 4 4 0.0000000771274
Punica granatum NC_045133.1 6 CH_pgr_188 4 4 0.0000000222459
Punica granatum NC_045131.1 6 CH_pgr_380 3 3 0.0000247041
Prunus persica Pp04 6 CH_ppe_9 17 21 6.54947e-40
Papaver somniferum NC_039365.1 6 CH_pso_1243 3 7 0.000737323
Papaver somniferum NC_039367.1 6 CH_pso_549 5 27 0.000000589497
Populus trichocarpa Chr11 6 CH_ptr_108 8 18 0.000000000000026036
Populus trichocarpa Chr11 6 CH_ptr_213 5 6 0.00000000143987
Populus trichocarpa Chr08 6 CH_ptr_324 4 4 0.00000016965
Populus trichocarpa Chr01 6 CH_ptr_37 10 10 9.96136e-25
Quercus lobata 4 6 CH_qlo_29 20 49 2.74365e-37
Quercus lobata 3 6 CH_qlo_654 5 6 0.00000000871062
Quercus lobata 3 6 CH_qlo_69 17 58 4.15717e-28
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_94 9 12 2.11386e-20
Rhododendron simsii chr04 6 CH_rsi_128 8 15 7.22072e-16
Rhododendron simsii chr12 6 CH_rsi_71 9 10 1.16547e-21
Striga asiatica scaffold52 6 CH_sas_240 3 16 0.000656209
Sechium edule LG02 6 CH_sed_114 4 4 0.00000000527833
Sechium edule LG08 6 CH_sed_255 3 3 0.00000870365
Sechium edule LG03 6 CH_sed_347 3 5 0.0000869511
Sequoiadendron giganteum chr4 6 CH_sgi_2616 3 6 0.000876649
Selaginella moellendorffii scaffold_42 6 CH_smo_3 14 29 3.23034e-28
Solanum pennellii Spenn-ch09 6 CH_spe_2 19 23 2.27193e-49
Solanum pennellii Spenn-ch07 6 CH_spe_21 9 9 9.62939e-23
Trochodendron aralioides group17 6 CH_tar_118 5 6 0.0000000000574325
Trochodendron aralioides group6 6 CH_tar_186 4 4 0.0000000132933
Theobroma cacao Chromosome_3 6 CH_tca_379 4 5 0.00000124696
Theobroma cacao Chromosome_7 6 CH_tca_483 4 9 0.0000312534
Theobroma cacao Chromosome_4 6 CH_tca_9 18 21 3.77328e-44
Trifolium pratense Tp57577_TGAC_v2_scaf_359 6 CH_tpr_395 3 3 0.000013237
Tripterygium wilfordii NC_052239.1 6 CH_twi_28 7 8 2.23952e-17
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_106 5 5 0.000000000112642
Vigna mungo CM024070.1 6 CH_vmu_126 4 4 0.0000000121
Vitis vinifera chr5 6 CH_vvi_462 4 9 0.0000350014
Vitis vinifera chr19 6 CH_vvi_50 14 77 1.5929e-20
Vitis vinifera chr5 6 CH_vvi_730 3 4 0.000638722
Zea mays 9 6 CH_zma_136 4 4 0.0000000185998
Zea mays 1 6 CH_zma_15 9 12 7.63348e-22

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001