Functional clusters
Information
- Type InterPro
- Description Metal-nicotianamine transporter YSL-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_184 | 2 | 2 | 0.0000802568 |
| Acer truncatum | chr9 | 5 | CH_acertr_134 | 4 | 4 | 0.000000000220749 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 5 | CH_arhy_629 | 3 | 3 | 0.00000109709 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_836 | 3 | 6 | 0.0000219298 |
| Amborella trichopoda | AmTr_v1.0_scaffold00016 | 5 | CH_atr_140 | 4 | 4 | 0.00000000273763 |
| Amborella trichopoda | AmTr_v1.0_scaffold00029 | 5 | CH_atr_141 | 4 | 4 | 0.00000000273763 |
| Amborella trichopoda | AmTr_v1.0_scaffold00154 | 5 | CH_atr_85 | 5 | 6 | 0.00000000000782702 |
| Brassica napus | A03 | 5 | CH_bna_871 | 3 | 5 | 0.0000209741 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_850 | 3 | 7 | 0.000018203 |
| Corylus avellana | 7 | 5 | CH_cav_180 | 4 | 5 | 0.00000000483257 |
| Corylus avellana | 9 | 5 | CH_cav_389 | 3 | 4 | 0.0000100841 |
| Coffea canephora | chr7 | 5 | CH_ccan_512 | 2 | 2 | 0.000153321 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_278 | 3 | 3 | 0.00000103247 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_154 | 4 | 4 | 0.000000000490446 |
| Carya illinoinensis | Chr11 | 5 | CH_cil_482 | 3 | 3 | 0.0000065698 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_51 | 8 | 9 | 1.25558e-21 |
| Citrullus lanatus | CG_Chr11 | 5 | CH_cla_157 | 3 | 4 | 0.00000566488 |
| Carica papaya | supercontig_70 | 5 | CH_cpa_646 | 2 | 2 | 0.000950661 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_638 | 3 | 8 | 0.00038867 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_248 | 6 | 6 | 4.19362e-16 |
| Lotus japonicus | chr2 | 5 | CH_lja_270 | 3 | 4 | 0.00000171786 |
| Magnolia biondii | Chr06 | 5 | CH_mbi_827 | 3 | 14 | 0.000108022 |
| Malus domestica | Chr14 | 5 | CH_mdo_514 | 3 | 3 | 0.000000355915 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_410 | 3 | 5 | 0.0000136515 |
| Punica granatum | NC_045131.1 | 5 | CH_pgr_265 | 3 | 3 | 0.00000070945 |
| Pisum sativum | chr2LG1 | 5 | CH_psa_120 | 4 | 4 | 0.000000000426274 |
| Populus trichocarpa | Chr17 | 5 | CH_ptr_86 | 6 | 6 | 1.79693e-16 |
| Quercus lobata | 9 | 5 | CH_qlo_423 | 5 | 7 | 0.00000000000488623 |
| Quercus lobata | 8 | 5 | CH_qlo_944 | 4 | 15 | 0.00000102266 |
| Rhododendron simsii | chr10 | 5 | CH_rsi_171 | 5 | 6 | 0.000000000000360512 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_372 | 3 | 3 | 0.00000211152 |
| Simmondsia chinensis | GWHAASQ00000020 | 5 | CH_sci_507 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_401 | 5 | 6 | 0.000000000000117087 |
| Solanum tuberosum | ST4.03ch05 | 5 | CH_stu_416 | 5 | 64 | 0.00000116783 |
| Trochodendron aralioides | group12 | 5 | CH_tar_365 | 3 | 3 | 0.00000196806 |
| Trochodendron aralioides | group8 | 5 | CH_tar_560 | 3 | 7 | 0.0000688056 |
| Tripterygium wilfordii | NC_052247.1 | 5 | CH_twi_212 | 3 | 3 | 0.000000559481 |
| Tripterygium wilfordii | NC_052247.1 | 5 | CH_twi_295 | 3 | 5 | 0.0000111838 |
| Utricularia gibba | unitig_0 | 5 | CH_ugi_69 | 3 | 3 | 0.00000121178 |
| Vitis vinifera | chr1 | 5 | CH_vvi_351 | 3 | 3 | 0.00000104144 |
| Vitis vinifera | chr17 | 5 | CH_vvi_648 | 3 | 13 | 0.000297145 |
| Zea mays | 10 | 5 | CH_zma_285 | 3 | 3 | 0.0000159222 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_184 | 2 | 2 | 0.0000802568 |
| Acer truncatum | chr9 | 6 | CH_acertr_134 | 4 | 4 | 0.000000000220749 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 6 | CH_arhy_629 | 3 | 3 | 0.00000109709 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_836 | 3 | 6 | 0.0000219298 |
| Amborella trichopoda | AmTr_v1.0_scaffold00016 | 6 | CH_atr_140 | 4 | 4 | 0.00000000273763 |
| Amborella trichopoda | AmTr_v1.0_scaffold00029 | 6 | CH_atr_141 | 4 | 4 | 0.00000000273763 |
| Amborella trichopoda | AmTr_v1.0_scaffold00154 | 6 | CH_atr_85 | 5 | 6 | 0.00000000000782702 |
| Brassica napus | A03 | 6 | CH_bna_871 | 3 | 5 | 0.0000209741 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_850 | 3 | 7 | 0.000018203 |
| Corylus avellana | 7 | 6 | CH_cav_180 | 4 | 5 | 0.00000000483257 |
| Corylus avellana | 9 | 6 | CH_cav_389 | 3 | 4 | 0.0000100841 |
| Coffea canephora | chr7 | 6 | CH_ccan_512 | 2 | 2 | 0.000153321 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_278 | 3 | 3 | 0.00000103247 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_154 | 4 | 4 | 0.000000000490446 |
| Carya illinoinensis | Chr11 | 6 | CH_cil_482 | 3 | 3 | 0.0000065698 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_51 | 8 | 9 | 1.25558e-21 |
| Citrullus lanatus | CG_Chr11 | 6 | CH_cla_157 | 3 | 4 | 0.00000566488 |
| Carica papaya | supercontig_70 | 6 | CH_cpa_646 | 2 | 2 | 0.000950661 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_638 | 3 | 8 | 0.00038867 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_248 | 6 | 6 | 4.19362e-16 |
| Lotus japonicus | chr2 | 6 | CH_lja_270 | 3 | 4 | 0.00000171786 |
| Magnolia biondii | Chr06 | 6 | CH_mbi_827 | 3 | 14 | 0.000108022 |
| Malus domestica | Chr14 | 6 | CH_mdo_514 | 3 | 3 | 0.000000355915 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_410 | 3 | 5 | 0.0000136515 |
| Punica granatum | NC_045131.1 | 6 | CH_pgr_265 | 3 | 3 | 0.00000070945 |
| Pisum sativum | chr2LG1 | 6 | CH_psa_120 | 4 | 4 | 0.000000000426274 |
| Populus trichocarpa | Chr17 | 6 | CH_ptr_86 | 6 | 6 | 1.79693e-16 |
| Quercus lobata | 9 | 6 | CH_qlo_423 | 5 | 7 | 0.00000000000488623 |
| Quercus lobata | 8 | 6 | CH_qlo_944 | 4 | 15 | 0.00000102266 |
| Rhododendron simsii | chr10 | 6 | CH_rsi_171 | 5 | 6 | 0.000000000000360512 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_372 | 3 | 3 | 0.00000211152 |
| Simmondsia chinensis | GWHAASQ00000020 | 6 | CH_sci_507 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_401 | 5 | 6 | 0.000000000000117087 |
| Solanum tuberosum | ST4.03ch05 | 6 | CH_stu_416 | 5 | 64 | 0.00000116783 |
| Trochodendron aralioides | group12 | 6 | CH_tar_365 | 3 | 3 | 0.00000196806 |
| Trochodendron aralioides | group8 | 6 | CH_tar_560 | 3 | 7 | 0.0000688056 |
| Tripterygium wilfordii | NC_052247.1 | 6 | CH_twi_212 | 3 | 3 | 0.000000559481 |
| Tripterygium wilfordii | NC_052247.1 | 6 | CH_twi_295 | 3 | 5 | 0.0000111838 |
| Utricularia gibba | unitig_0 | 6 | CH_ugi_69 | 3 | 3 | 0.00000121178 |
| Vitis vinifera | chr1 | 6 | CH_vvi_351 | 3 | 3 | 0.00000104144 |
| Vitis vinifera | chr17 | 6 | CH_vvi_648 | 3 | 13 | 0.000297145 |
| Zea mays | 10 | 6 | CH_zma_285 | 3 | 3 | 0.0000159222 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |