Functional clusters
Information
- Type InterPro
- Description Protein PIN-LIKES 1/3/4/5/7
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_35 | 6 | 6 | 1.17691e-16 |
| Avicennia marina | ScioBoG_19538_HRSCAF_19626 | 5 | CH_ama_227 | 2 | 2 | 0.000862218 |
| Aquilegia oxysepala | CHR06 | 5 | CH_aox_61 | 4 | 4 | 0.0000000000232151 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_511 | 2 | 2 | 0.000286492 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_217 | 3 | 3 | 0.000000575799 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_151 | 7 | 77 | 0.0000000000000731696 |
| Coffea canephora | chr7 | 5 | CH_ccan_49 | 4 | 18 | 0.00000000000474478 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_769 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr07 | 5 | CH_cil_603 | 3 | 8 | 0.0000709148 |
| Carya illinoinensis | Chr14 | 5 | CH_cil_81 | 6 | 6 | 1.90259e-17 |
| Citrullus lanatus | CG_Chr10 | 5 | CH_cla_367 | 2 | 3 | 0.000798344 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3036 | 5 | CH_cqu_63 | 6 | 6 | 4.3041e-17 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_638 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_188 | 3 | 4 | 0.000000167232 |
| Davidia involucrata | GWHABJS00000012 | 5 | CH_din_477 | 3 | 17 | 0.0000509687 |
| Durio zibethinus | NW_019168492.1 | 5 | CH_dzi_340 | 3 | 10 | 0.0000216379 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_193 | 4 | 15 | 0.00000000554662 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_1211 | 3 | 17 | 0.000195288 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_1246 | 3 | 20 | 0.000327257 |
| Erythranthe guttata | scaffold_8 | 5 | CH_egut_694 | 2 | 3 | 0.000655292 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_315 | 3 | 4 | 0.0000000832879 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_528 | 3 | 3 | 0.000000486611 |
| Gossypium hirsutum | D05 | 5 | CH_ghi_529 | 3 | 3 | 0.000000486611 |
| Glycine max | Gm16 | 5 | CH_gma_268 | 4 | 7 | 0.0000000104437 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_263 | 3 | 3 | 0.000000241431 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_194 | 6 | 34 | 0.00000000000241417 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_645 | 3 | 5 | 0.00000492641 |
| Hydrangea macrophylla | Hma1.2p1_0034F.1 | 5 | CH_hma_524 | 2 | 2 | 0.000333259 |
| Lupinus albus | Lalb_Chr05 | 5 | CH_lal_98 | 5 | 13 | 0.0000000000941115 |
| Lotus japonicus | chr4 | 5 | CH_lja_440 | 3 | 14 | 0.00015606 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_447 | 3 | 3 | 0.00000180323 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_63 | 8 | 21 | 3.90274e-19 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_319 | 3 | 3 | 0.0000000141523 |
| Malus domestica | Chr05 | 5 | CH_mdo_245 | 4 | 6 | 0.000000000171756 |
| Medicago truncatula | chr8 | 5 | CH_mtr_1409 | 3 | 22 | 0.000855311 |
| Medicago truncatula | chr5 | 5 | CH_mtr_185 | 7 | 37 | 0.0000000000000158213 |
| Nelumbo nucifera | chr6 | 5 | CH_nnu_549 | 2 | 2 | 0.000481684 |
| Oryza sativa ssp. japonica | chr09 | 5 | CH_osa_571 | 2 | 2 | 0.000158437 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_183 | 4 | 17 | 0.0000000150709 |
| Prunus persica | Pp05 | 5 | CH_ppe_338 | 3 | 4 | 0.000000133547 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_163 | 5 | 40 | 0.00000000916596 |
| Papaver somniferum | NC_039360.1 | 5 | CH_pso_1191 | 2 | 2 | 0.000630822 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_324 | 3 | 4 | 0.00000181356 |
| Quercus lobata | 6 | 5 | CH_qlo_1189 | 3 | 13 | 0.0000399828 |
| Quercus lobata | 4 | 5 | CH_qlo_804 | 3 | 3 | 0.000000139945 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_200 | 6 | 17 | 0.0000000000000258767 |
| Salvia bowleyana | GWHASIU00000006 | 5 | CH_sbo_277 | 4 | 25 | 0.0000000535512 |
| Salix brachista | GWHAAZH00000011 | 5 | CH_sbr_269 | 3 | 3 | 0.000000333554 |
| Simmondsia chinensis | GWHAASQ00000003 | 5 | CH_sci_373 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_590 | 4 | 4 | 0.0000000000242797 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_691 | 4 | 6 | 0.000000000364121 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_534 | 3 | 11 | 0.0000298151 |
| Schrenkiella parvula | ch5-7 | 5 | CH_spa_356 | 2 | 2 | 0.00078734 |
| Selenicereus undatus | Scaffold_19641 | 5 | CH_sun_104 | 3 | 5 | 0.00000158369 |
| Selenicereus undatus | Scaffold_33673 | 5 | CH_sun_158 | 3 | 13 | 0.0000452509 |
| Theobroma cacao | Chromosome_10 | 5 | CH_tca_30 | 8 | 8 | 4.58568e-24 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_674 | 2 | 2 | 0.000557543 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_43 | 5 | 6 | 0.000000000000197667 |
| Vigna mungo | CM024069.1 | 5 | CH_vmu_611 | 3 | 19 | 0.000725874 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_120 | 4 | 12 | 0.0000000418846 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_223 | 3 | 4 | 0.00000183412 |
| Vitis vinifera | chr4 | 5 | CH_vvi_42 | 7 | 7 | 5.4934e-22 |
| Acer truncatum | chr3 | 6 | CH_acertr_35 | 6 | 6 | 1.17691e-16 |
| Avicennia marina | ScioBoG_19538_HRSCAF_19626 | 6 | CH_ama_227 | 2 | 2 | 0.000862218 |
| Aquilegia oxysepala | CHR06 | 6 | CH_aox_61 | 4 | 4 | 0.0000000000232151 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_511 | 2 | 2 | 0.000286492 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_217 | 3 | 3 | 0.000000575799 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_151 | 7 | 77 | 0.0000000000000731696 |
| Coffea canephora | chr7 | 6 | CH_ccan_49 | 4 | 18 | 0.00000000000474478 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_769 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr07 | 6 | CH_cil_603 | 3 | 8 | 0.0000709148 |
| Carya illinoinensis | Chr14 | 6 | CH_cil_81 | 6 | 6 | 1.90259e-17 |
| Citrullus lanatus | CG_Chr10 | 6 | CH_cla_367 | 2 | 3 | 0.000798344 |
| Cucumis melo | chr06 | 6 | CH_cme_349 | 2 | 3 | 0.000200133 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3036 | 6 | CH_cqu_63 | 6 | 6 | 4.3041e-17 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_638 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_188 | 3 | 4 | 0.000000167232 |
| Davidia involucrata | GWHABJS00000012 | 6 | CH_din_477 | 3 | 17 | 0.0000509687 |
| Durio zibethinus | NW_019168492.1 | 6 | CH_dzi_340 | 3 | 10 | 0.0000216379 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_193 | 4 | 15 | 0.00000000554662 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_1211 | 3 | 17 | 0.000195288 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_1246 | 3 | 20 | 0.000327257 |
| Erythranthe guttata | scaffold_8 | 6 | CH_egut_694 | 2 | 3 | 0.000655292 |
| Fragaria x ananassa | Fvb5-4 | 6 | CH_fan_644 | 3 | 9 | 0.0000123324 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_315 | 3 | 4 | 0.0000000832879 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_528 | 3 | 3 | 0.000000486611 |
| Gossypium hirsutum | D05 | 6 | CH_ghi_529 | 3 | 3 | 0.000000486611 |
| Glycine max | Gm16 | 6 | CH_gma_268 | 4 | 7 | 0.0000000104437 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_263 | 3 | 3 | 0.000000241431 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_194 | 6 | 34 | 0.00000000000241417 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_645 | 3 | 5 | 0.00000492641 |
| Hydrangea macrophylla | Hma1.2p1_0034F.1 | 6 | CH_hma_524 | 2 | 2 | 0.000333259 |
| Lupinus albus | Lalb_Chr05 | 6 | CH_lal_98 | 5 | 13 | 0.0000000000941115 |
| Lotus japonicus | chr4 | 6 | CH_lja_440 | 3 | 14 | 0.00015606 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_447 | 3 | 3 | 0.00000180323 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_63 | 8 | 21 | 3.90274e-19 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_319 | 3 | 3 | 0.0000000141523 |
| Malus domestica | Chr05 | 6 | CH_mdo_245 | 4 | 6 | 0.000000000171756 |
| Medicago truncatula | chr8 | 6 | CH_mtr_1409 | 3 | 22 | 0.000855311 |
| Medicago truncatula | chr5 | 6 | CH_mtr_185 | 7 | 37 | 0.0000000000000158213 |
| Nelumbo nucifera | chr6 | 6 | CH_nnu_549 | 2 | 2 | 0.000481684 |
| Oryza sativa ssp. japonica | chr09 | 6 | CH_osa_571 | 2 | 2 | 0.000158437 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_183 | 4 | 17 | 0.0000000150709 |
| Prunus persica | Pp05 | 6 | CH_ppe_338 | 3 | 4 | 0.000000133547 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_163 | 5 | 40 | 0.00000000916596 |
| Papaver somniferum | NC_039360.1 | 6 | CH_pso_1191 | 2 | 2 | 0.000630822 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_324 | 3 | 4 | 0.00000181356 |
| Quercus lobata | 6 | 6 | CH_qlo_1189 | 3 | 13 | 0.0000399828 |
| Quercus lobata | 4 | 6 | CH_qlo_804 | 3 | 3 | 0.000000139945 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_200 | 6 | 17 | 0.0000000000000258767 |
| Salvia bowleyana | GWHASIU00000006 | 6 | CH_sbo_277 | 4 | 25 | 0.0000000535512 |
| Salix brachista | GWHAAZH00000011 | 6 | CH_sbr_269 | 3 | 3 | 0.000000333554 |
| Simmondsia chinensis | GWHAASQ00000003 | 6 | CH_sci_373 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_590 | 4 | 4 | 0.0000000000242797 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_691 | 4 | 6 | 0.000000000364121 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_534 | 3 | 11 | 0.0000298151 |
| Schrenkiella parvula | ch5-7 | 6 | CH_spa_356 | 2 | 2 | 0.00078734 |
| Selenicereus undatus | Scaffold_19641 | 6 | CH_sun_104 | 3 | 5 | 0.00000158369 |
| Selenicereus undatus | Scaffold_33673 | 6 | CH_sun_158 | 3 | 13 | 0.0000452509 |
| Theobroma cacao | Chromosome_10 | 6 | CH_tca_30 | 8 | 8 | 4.58568e-24 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_674 | 2 | 2 | 0.000557543 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_43 | 5 | 6 | 0.000000000000197667 |
| Vigna mungo | CM024069.1 | 6 | CH_vmu_611 | 3 | 19 | 0.000725874 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_120 | 4 | 12 | 0.0000000418846 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_223 | 3 | 4 | 0.00000183412 |
| Vitis vinifera | chr4 | 6 | CH_vvi_42 | 7 | 7 | 5.4934e-22 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |