Functional clusters

Information

  • Type InterPro
  • Description Alternative NADH dehydrogenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 5 CH_acertr_303 3 3 0.0000001491
Avicennia marina ScioBoG_102840_HRSCAF_103099 5 CH_ama_96 3 10 0.000026738
Brassica carinata ChrC06 5 CH_bca_2168 2 2 0.000961939
Camellia sinensis var. sinensis Chr7 5 CH_camsi_1438 2 2 0.000687821
Capsicum annuum PGAv.1.6.scaffold508 5 CH_can_867 2 2 0.000826105
Carica papaya supercontig_34 5 CH_cpa_604 2 2 0.000570396
Eucalyptus grandis Chr11 5 CH_egr_607 4 8 0.0000000088361
Erythranthe guttata scaffold_13 5 CH_egut_736 2 2 0.000728147
Fragaria vesca Fvb6 5 CH_fve_279 4 14 0.0000000214683
Lupinus albus Lalb_Chr03 5 CH_lal_239 3 3 0.000000495806
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_881 2 2 0.00077101
Magnolia biondii Chr02 5 CH_mbi_96 8 61 0.00000000000000176172
Manihot esculenta Chromosome13 5 CH_mes_733 2 2 0.000915947
Medicago truncatula chr4 5 CH_mtr_1440 2 2 0.000862813
Petunia axillaris Peaxi162Scf00608 5 CH_pax_720 2 2 0.000703556
Petunia axillaris Peaxi162Scf00007 5 CH_pax_721 2 2 0.000703556
Punica granatum NC_045128.1 5 CH_pgr_574 2 2 0.000450214
Prunus persica Pp03 5 CH_ppe_867 2 2 0.000745962
Populus trichocarpa Chr13 5 CH_ptr_347 3 3 0.00000028064
Sequoiadendron giganteum chr10 5 CH_sgi_196 7 9 1.25059e-20
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_824 2 2 0.000929238
Acer truncatum chr6 6 CH_acertr_303 3 3 0.0000001491
Avicennia marina ScioBoG_102840_HRSCAF_103099 6 CH_ama_96 3 10 0.000026738
Brassica carinata ChrC06 6 CH_bca_2168 2 2 0.000961939
Camellia sinensis var. sinensis Chr7 6 CH_camsi_1438 2 2 0.000687821
Capsicum annuum PGAv.1.6.scaffold508 6 CH_can_867 2 2 0.000826105
Carica papaya supercontig_34 6 CH_cpa_604 2 2 0.000570396
Eucalyptus grandis Chr11 6 CH_egr_607 4 8 0.0000000088361
Erythranthe guttata scaffold_13 6 CH_egut_736 2 2 0.000728147
Fragaria vesca Fvb6 6 CH_fve_279 4 14 0.0000000214683
Lupinus albus Lalb_Chr03 6 CH_lal_239 3 3 0.000000495806
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_881 2 2 0.00077101
Magnolia biondii Chr02 6 CH_mbi_96 8 61 0.00000000000000176172
Manihot esculenta Chromosome13 6 CH_mes_733 2 2 0.000915947
Medicago truncatula chr4 6 CH_mtr_1440 2 2 0.000862813
Petunia axillaris Peaxi162Scf00608 6 CH_pax_720 2 2 0.000703556
Petunia axillaris Peaxi162Scf00007 6 CH_pax_721 2 2 0.000703556
Punica granatum NC_045128.1 6 CH_pgr_574 2 2 0.000450214
Prunus persica Pp03 6 CH_ppe_867 2 2 0.000745962
Populus trichocarpa Chr13 6 CH_ptr_347 3 3 0.00000028064
Sequoiadendron giganteum chr10 6 CH_sgi_196 7 9 1.25059e-20
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_824 2 2 0.000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001