Functional clusters

Information

  • Type InterPro
  • Description Protein NLP

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_217 2 2 0.0000802568
Avicennia marina ScioBoG_18778_HRSCAF_18863 5 CH_ama_18 4 4 0.000000000951992
Camellia sinensis var. sinensis Chr14 5 CH_camsi_110 8 22 0.00000000000000261882
Camellia sinensis var. sinensis Chr14 5 CH_camsi_156 9 61 0.0000000000000991694
Camellia sinensis var. sinensis Chr14 5 CH_camsi_715 4 9 0.00000298793
Camellia sinensis var. sinensis Chr12 5 CH_camsi_784 4 11 0.00000781514
Coffea canephora chr6 5 CH_ccan_43 6 62 0.00000000000211268
Corchorus olitorius AWUE01014576.1 5 CH_col_184 2 2 0.000292099
Daucus carota DCARv2_Chr9 5 CH_dca_1 17 24 1.52535e-46
Davidia involucrata GWHABJS00000018 5 CH_din_137 5 6 0.000000000040104
Davidia involucrata GWHABJS00000019 5 CH_din_257 4 6 0.000000154112
Davidia involucrata GWHABJS00000002 5 CH_din_366 5 41 0.00000491412
Davidia involucrata GWHABJS00000011 5 CH_din_406 3 3 0.000015233
Davidia involucrata GWHABJS00000009 5 CH_din_690 3 6 0.000304174
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_328 5 22 0.00000076134
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_375 4 8 0.00000233494
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_64 7 16 0.000000000000235515
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_649 3 4 0.000148992
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_783 4 26 0.000492232
Helianthus annuus HanXRQChr05 5 CH_han_146 6 6 0.0000000000000873735
Helianthus annuus HanXRQChr17 5 CH_han_25 14 41 2.09249e-27
Helianthus annuus HanXRQChr08 5 CH_han_278 5 6 0.00000000050197
Helianthus annuus HanXRQChr12 5 CH_han_504 4 5 0.000000393621
Helianthus annuus HanXRQChr06 5 CH_han_62 10 20 1.56801e-20
Hydrangea macrophylla Hma1.2p1_0359F.1 5 CH_hma_196 3 3 0.00000222136
Lonicera japonica GWHAAZE00000008 5 CH_lonja_369 6 16 0.0000000102524
Lonicera japonica GWHAAZE00000003 5 CH_lonja_4 28 62 8.42266e-58
Lonicera japonica GWHAAZE00000003 5 CH_lonja_69 16 78 2.25762e-24
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_452 3 4 0.000001902
Magnolia biondii Chr06 5 CH_mbi_573 3 6 0.00000247594
Malus domestica Chr06 5 CH_mdo_1436 2 2 0.000796344
Nicotiana tabacum Nitab4.5_0000175 5 CH_nta_338 2 2 0.000658364
Olea europaea scaffold773 5 CH_oeu_98 4 6 0.00000000489183
Prunus persica Pp05 5 CH_ppe_866 2 2 0.000745962
Populus trichocarpa Chr17 5 CH_ptr_392 4 14 0.0000013757
Quercus lobata 10 5 CH_qlo_1015 3 6 0.00000279802
Rhododendron simsii chr02 5 CH_rsi_50 13 58 4.92693e-25
Rhododendron simsii chr05 5 CH_rsi_750 3 5 0.000182487
Salvia bowleyana GWHASIU00000008 5 CH_sbo_62 9 29 2.39872e-20
Simmondsia chinensis GWHAASQ00000022 5 CH_sci_166 3 3 0.000000608964
Sequoiadendron giganteum chr3 5 CH_sgi_1008 3 3 0.0000000355983
Selaginella moellendorffii scaffold_59 5 CH_smo_333 2 2 0.000560224
Solanum pennellii Spenn-ch11 5 CH_spe_145 5 17 0.000000000233336
Solanum tuberosum ST4.03ch11 5 CH_stu_18 12 19 2.03811e-31
Solanum tuberosum ST4.03ch09 5 CH_stu_755 3 7 0.000278575
Utricularia gibba unitig_8 5 CH_ugi_349 2 2 0.000492287
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_314 4 11 0.00000383196
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_66 8 42 0.000000000000277161
Vanilla planifolia CM028150.1 5 CH_vpl_251 3 11 0.00000540224
Vitis vinifera chr2 5 CH_vvi_792 2 2 0.00076063
Zea mays 2 5 CH_zma_239 3 3 0.00000320012
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_217 2 2 0.0000802568
Avicennia marina ScioBoG_18778_HRSCAF_18863 6 CH_ama_18 4 4 0.000000000951992
Camellia sinensis var. sinensis Chr14 6 CH_camsi_110 8 22 0.00000000000000261882
Camellia sinensis var. sinensis Chr14 6 CH_camsi_156 9 61 0.0000000000000991694
Camellia sinensis var. sinensis Chr14 6 CH_camsi_715 4 9 0.00000298793
Camellia sinensis var. sinensis Chr12 6 CH_camsi_784 4 11 0.00000781514
Coffea canephora chr6 6 CH_ccan_43 6 62 0.00000000000211268
Corchorus olitorius AWUE01014576.1 6 CH_col_184 2 2 0.000292099
Daucus carota DCARv2_Chr9 6 CH_dca_1 17 24 1.52535e-46
Davidia involucrata GWHABJS00000018 6 CH_din_137 5 6 0.000000000040104
Davidia involucrata GWHABJS00000019 6 CH_din_257 4 6 0.000000154112
Davidia involucrata GWHABJS00000002 6 CH_din_366 5 41 0.00000491412
Davidia involucrata GWHABJS00000011 6 CH_din_406 3 3 0.000015233
Davidia involucrata GWHABJS00000009 6 CH_din_690 3 6 0.000304174
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_328 5 22 0.00000076134
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_375 4 8 0.00000233494
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_64 7 16 0.000000000000235515
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_649 3 4 0.000148992
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_783 4 26 0.000492232
Helianthus annuus HanXRQChr05 6 CH_han_146 6 6 0.0000000000000873735
Helianthus annuus HanXRQChr17 6 CH_han_25 14 41 2.09249e-27
Helianthus annuus HanXRQChr08 6 CH_han_278 5 6 0.00000000050197
Helianthus annuus HanXRQChr12 6 CH_han_504 4 5 0.000000393621
Helianthus annuus HanXRQChr06 6 CH_han_62 10 20 1.56801e-20
Hydrangea macrophylla Hma1.2p1_0359F.1 6 CH_hma_196 3 3 0.00000222136
Lonicera japonica GWHAAZE00000008 6 CH_lonja_369 6 16 0.0000000102524
Lonicera japonica GWHAAZE00000003 6 CH_lonja_4 28 62 8.42266e-58
Lonicera japonica GWHAAZE00000003 6 CH_lonja_69 16 78 2.25762e-24
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_452 3 4 0.000001902
Magnolia biondii Chr06 6 CH_mbi_573 3 6 0.00000247594
Malus domestica Chr06 6 CH_mdo_1436 2 2 0.000796344
Nicotiana tabacum Nitab4.5_0000175 6 CH_nta_338 2 2 0.000658364
Olea europaea scaffold773 6 CH_oeu_98 4 6 0.00000000489183
Prunus persica Pp05 6 CH_ppe_866 2 2 0.000745962
Populus trichocarpa Chr17 6 CH_ptr_392 4 14 0.0000013757
Quercus lobata 10 6 CH_qlo_1015 3 6 0.00000279802
Rhododendron simsii chr02 6 CH_rsi_50 13 58 4.92693e-25
Rhododendron simsii chr05 6 CH_rsi_750 3 5 0.000182487
Salvia bowleyana GWHASIU00000008 6 CH_sbo_62 9 29 2.39872e-20
Simmondsia chinensis GWHAASQ00000022 6 CH_sci_166 3 3 0.000000608964
Sequoiadendron giganteum chr3 6 CH_sgi_1008 3 3 0.0000000355983
Selaginella moellendorffii scaffold_59 6 CH_smo_333 2 2 0.000560224
Solanum pennellii Spenn-ch11 6 CH_spe_145 5 17 0.000000000233336
Solanum tuberosum ST4.03ch11 6 CH_stu_18 12 19 2.03811e-31
Solanum tuberosum ST4.03ch09 6 CH_stu_755 3 7 0.000278575
Utricularia gibba unitig_8 6 CH_ugi_349 2 2 0.000492287
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_314 4 11 0.00000383196
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_66 8 42 0.000000000000277161
Vanilla planifolia CM028150.1 6 CH_vpl_251 3 11 0.00000540224
Vitis vinifera chr2 6 CH_vvi_792 2 2 0.00076063
Zea mays 2 6 CH_zma_239 3 3 0.00000320012

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001