Functional clusters

Information

  • Type InterPro
  • Description Medium-chain dehydrogenase/reductase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 5 CH_aag_338 2 2 0.000481541
Acer truncatum chr3 5 CH_acertr_171 4 5 0.000000002601
Actinidia chinensis Lachesis_group3 5 CH_ach_170 3 4 0.00000148702
Avicennia marina ScioBoG_3008_HRSCAF_3015 5 CH_ama_213 2 2 0.000517331
Aquilegia oxysepala CHR02 5 CH_aox_222 3 4 0.00000324107
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 5 CH_arhy_1045 3 6 0.000208683
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_345 5 9 0.000000000330404
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_61 9 10 1.13812e-24
Arabidopsis thaliana Chr5 5 CH_ath_294 4 36 0.00000296007
Arabidopsis thaliana Chr5 5 CH_ath_66 5 7 0.000000000000136537
Amborella trichopoda AmTr_v1.0_scaffold00104 5 CH_atr_232 4 6 0.000000336816
Amborella trichopoda AmTr_v1.0_scaffold00020 5 CH_atr_27 9 10 7.02843e-23
Amborella trichopoda AmTr_v1.0_scaffold00013 5 CH_atr_334 3 3 0.0000246132
Amborella trichopoda AmTr_v1.0_scaffold00066 5 CH_atr_37 8 9 8.84468e-20
Camellia sinensis var. sinensis Chr9 5 CH_camsi_38 8 8 4.29582e-23
Camellia sinensis var. sinensis Contig795 5 CH_camsi_77 8 19 3.23588e-18
Capsicum annuum PGAv.1.6.scaffold500 5 CH_can_35 9 11 8.46923e-25
Corylus avellana 9 5 CH_cav_58 6 9 0.00000000000000462494
Coffea canephora chr3 5 CH_ccan_11 7 53 2.61133e-17
Coffea canephora chr3 5 CH_ccan_39 6 69 0.000000000000636341
Carya illinoinensis Chr01 5 CH_cil_98 6 7 0.00000000000000178325
Citrullus lanatus CG_Chr06 5 CH_cla_260 4 50 0.000235209
Chenopodium quinoa C_Quinoa_Scaffold_2187 5 CH_cqu_234 4 5 0.00000000290354
Chenopodium quinoa C_Quinoa_Scaffold_1611 5 CH_cqu_456 3 3 0.0000018859
Davidia involucrata GWHABJS00000016 5 CH_din_51 7 13 2.41685e-17
Eucalyptus grandis Chr01 5 CH_egr_38 17 40 2.59993e-37
Fragaria vesca Fvb6 5 CH_fve_496 3 4 0.0000169855
Gossypium hirsutum A02 5 CH_ghi_143 6 10 7.9338e-16
Helianthus annuus HanXRQChr03 5 CH_han_349 4 6 0.00000000794259
Lonicera japonica GWHAAZE00000006 5 CH_lonja_550 3 3 0.00000153866
Lonicera japonica GWHAAZE00000104 5 CH_lonja_87 7 7 6.23701e-21
Magnolia biondii Chr07 5 CH_mbi_208 6 33 0.000000000124082
Magnolia biondii Chr13 5 CH_mbi_578 3 3 0.00000288708
Malus domestica Chr09 5 CH_mdo_652 3 3 0.00000332188
Medicago truncatula chr8 5 CH_mtr_141 7 20 1.88626e-16
Nelumbo nucifera chr1 5 CH_nnu_59 6 19 0.000000000000146021
Punica granatum NC_045130.1 5 CH_pgr_25 8 12 2.68646e-20
Prunus persica Pp04 5 CH_ppe_494 3 4 0.0000121493
Papaver somniferum NW_020620714.1 5 CH_pso_137 5 5 0.00000000000000844053
Papaver somniferum NC_039358.1 5 CH_pso_333 4 7 0.00000000218458
Populus trichocarpa Chr07 5 CH_ptr_201 5 11 0.000000000448791
Populus trichocarpa Chr17 5 CH_ptr_27 12 36 3.53577e-28
Quercus lobata 10 5 CH_qlo_271 8 15 0.00000000000000125384
Quercus lobata 10 5 CH_qlo_56 16 54 4.62628e-30
Quercus lobata 10 5 CH_qlo_8 27 79 1.27036e-56
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_539 4 5 0.0000000559529
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_54 14 73 9.36831e-27
Salix brachista GWHAAZH00000007 5 CH_sbr_72 7 26 0.00000000000000256152
Simmondsia chinensis GWHAASQ00000013 5 CH_sci_94 5 23 0.0000000104516
Sechium edule LG08 5 CH_sed_34 6 6 3.84356e-17
Solanum pennellii Spenn-ch12 5 CH_spe_340 3 3 0.000000652882
Solanum tuberosum ST4.03ch12 5 CH_stu_424 3 3 0.00000143387
Selenicereus undatus Scaffold_33679 5 CH_sun_90 4 17 0.000000191398
Vanilla planifolia CM028151.1 5 CH_vpl_136 3 3 0.0000000818945
Anthoceros agrestis Sc2ySwM_344 6 CH_aag_338 2 2 0.000481541
Acer truncatum chr3 6 CH_acertr_171 4 5 0.000000002601
Actinidia chinensis Lachesis_group3 6 CH_ach_170 3 4 0.00000148702
Avicennia marina ScioBoG_3008_HRSCAF_3015 6 CH_ama_213 2 2 0.000517331
Aquilegia oxysepala CHR02 6 CH_aox_222 3 4 0.00000324107
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 6 CH_arhy_1045 3 6 0.000208683
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_345 5 9 0.000000000330404
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_61 9 10 1.13812e-24
Arabidopsis thaliana Chr5 6 CH_ath_294 4 36 0.00000296007
Arabidopsis thaliana Chr5 6 CH_ath_66 5 7 0.000000000000136537
Amborella trichopoda AmTr_v1.0_scaffold00104 6 CH_atr_232 4 6 0.000000336816
Amborella trichopoda AmTr_v1.0_scaffold00020 6 CH_atr_27 9 10 7.02843e-23
Amborella trichopoda AmTr_v1.0_scaffold00013 6 CH_atr_334 3 3 0.0000246132
Amborella trichopoda AmTr_v1.0_scaffold00066 6 CH_atr_37 8 9 8.84468e-20
Camellia sinensis var. sinensis Chr9 6 CH_camsi_38 8 8 4.29582e-23
Camellia sinensis var. sinensis Contig795 6 CH_camsi_77 8 19 3.23588e-18
Capsicum annuum PGAv.1.6.scaffold500 6 CH_can_35 9 11 8.46923e-25
Corylus avellana 9 6 CH_cav_58 6 9 0.00000000000000462494
Coffea canephora chr3 6 CH_ccan_11 7 53 2.61133e-17
Coffea canephora chr3 6 CH_ccan_39 6 69 0.000000000000636341
Carya illinoinensis Chr01 6 CH_cil_98 6 7 0.00000000000000178325
Citrullus lanatus CG_Chr06 6 CH_cla_260 4 50 0.000235209
Cucumis melo chr01 6 CH_cme_93 4 4 0.000000000112236
Chenopodium quinoa C_Quinoa_Scaffold_2187 6 CH_cqu_234 4 5 0.00000000290354
Chenopodium quinoa C_Quinoa_Scaffold_1611 6 CH_cqu_456 3 3 0.0000018859
Davidia involucrata GWHABJS00000016 6 CH_din_51 7 13 2.41685e-17
Eucalyptus grandis Chr01 6 CH_egr_38 17 40 2.59993e-37
Fragaria x ananassa Fvb6-3 6 CH_fan_251 4 6 0.0000000102477
Fragaria vesca Fvb6 6 CH_fve_496 3 4 0.0000169855
Gossypium hirsutum A02 6 CH_ghi_143 6 10 7.9338e-16
Helianthus annuus HanXRQChr03 6 CH_han_349 4 6 0.00000000794259
Lonicera japonica GWHAAZE00000006 6 CH_lonja_550 3 3 0.00000153866
Lonicera japonica GWHAAZE00000104 6 CH_lonja_87 7 7 6.23701e-21
Magnolia biondii Chr07 6 CH_mbi_208 6 33 0.000000000124082
Magnolia biondii Chr13 6 CH_mbi_578 3 3 0.00000288708
Malus domestica Chr09 6 CH_mdo_652 3 3 0.00000332188
Medicago truncatula chr8 6 CH_mtr_141 7 20 1.88626e-16
Nelumbo nucifera chr1 6 CH_nnu_59 6 19 0.000000000000146021
Punica granatum NC_045130.1 6 CH_pgr_25 8 12 2.68646e-20
Prunus persica Pp04 6 CH_ppe_494 3 4 0.0000121493
Papaver somniferum NW_020620714.1 6 CH_pso_137 5 5 0.00000000000000844053
Papaver somniferum NC_039358.1 6 CH_pso_333 4 7 0.00000000218458
Populus trichocarpa Chr07 6 CH_ptr_201 5 11 0.000000000448791
Populus trichocarpa Chr17 6 CH_ptr_27 12 36 3.53577e-28
Quercus lobata 10 6 CH_qlo_271 8 15 0.00000000000000125384
Quercus lobata 10 6 CH_qlo_56 16 54 4.62628e-30
Quercus lobata 10 6 CH_qlo_8 27 79 1.27036e-56
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_539 4 5 0.0000000559529
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_54 14 73 9.36831e-27
Salix brachista GWHAAZH00000007 6 CH_sbr_72 7 26 0.00000000000000256152
Simmondsia chinensis GWHAASQ00000013 6 CH_sci_94 5 23 0.0000000104516
Sechium edule LG08 6 CH_sed_34 6 6 3.84356e-17
Solanum pennellii Spenn-ch12 6 CH_spe_340 3 3 0.000000652882
Solanum tuberosum ST4.03ch12 6 CH_stu_424 3 3 0.00000143387
Selenicereus undatus Scaffold_33679 6 CH_sun_90 4 17 0.000000191398
Vanilla planifolia CM028151.1 6 CH_vpl_136 3 3 0.0000000818945

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001