Functional clusters
Information
- Type InterPro
- Description F-box protein, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_170 | 6 | 33 | 0.00000000707453 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_224 | 5 | 58 | 0.000000196603 |
| Brassica carinata | ChrC02 | 5 | CH_bca_1482 | 3 | 4 | 0.000163425 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1483 | 3 | 4 | 0.000163425 |
| Brassica carinata | ChrC05 | 5 | CH_bca_166 | 7 | 24 | 0.00000000000379144 |
| Brassica carinata | ChrC06 | 5 | CH_bca_511 | 5 | 15 | 0.0000000654051 |
| Brassica napus | C05 | 5 | CH_bna_1004 | 3 | 3 | 0.0000586907 |
| Brassica napus | C08 | 5 | CH_bna_1190 | 3 | 4 | 0.00023462 |
| Brassica napus | A09 | 5 | CH_bna_1408 | 3 | 5 | 0.000586194 |
| Brassica napus | A05 | 5 | CH_bna_174 | 7 | 27 | 0.000000000019445 |
| Brassica napus | C05 | 5 | CH_bna_26 | 11 | 34 | 1.9477e-21 |
| Brassica napus | C09 | 5 | CH_bna_621 | 5 | 24 | 0.00000155121 |
| Brassica napus | C09 | 5 | CH_bna_745 | 4 | 9 | 0.00000588359 |
| Brassica napus | A09 | 5 | CH_bna_94 | 7 | 11 | 0.00000000000000730446 |
| Brassica oleracea | C8 | 5 | CH_bol_203 | 4 | 4 | 0.0000000221981 |
| Brassica oleracea | C9 | 5 | CH_bol_347 | 4 | 8 | 0.00000155011 |
| Brassica oleracea | C9 | 5 | CH_bol_487 | 4 | 14 | 0.0000220863 |
| Brassica oleracea | C5 | 5 | CH_bol_506 | 3 | 3 | 0.0000295263 |
| Brassica oleracea | C5 | 5 | CH_bol_59 | 8 | 32 | 0.0000000000000587118 |
| Brassica oleracea | C4 | 5 | CH_bol_634 | 3 | 4 | 0.000118037 |
| Brassica rapa | A09 | 5 | CH_bra_148 | 4 | 5 | 0.0000000698791 |
| Brassica rapa | A05 | 5 | CH_bra_40 | 9 | 80 | 0.000000000000337834 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_1367 | 2 | 2 | 0.000458547 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_413 | 3 | 3 | 0.0000145054 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_8 | 14 | 34 | 2.37758e-32 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_120 | 5 | 6 | 0.0000000000432576 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_187 | 4 | 4 | 0.0000000103845 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_379 | 3 | 3 | 0.0000142018 |
| Davidia involucrata | GWHABJS00000268 | 5 | CH_din_601 | 2 | 2 | 0.000150038 |
| Durio zibethinus | NW_019168381.1 | 5 | CH_dzi_160 | 3 | 3 | 0.0000000128896 |
| Eutrema salsugineum | scaffold_13 | 5 | CH_esa_289 | 3 | 3 | 0.0000226162 |
| Eutrema salsugineum | scaffold_3 | 5 | CH_esa_386 | 3 | 5 | 0.000225848 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_41 | 9 | 34 | 2.58903e-16 |
| Oryza sativa ssp. japonica | chr02 | 5 | CH_osa_44 | 8 | 25 | 1.70405e-18 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_170 | 6 | 33 | 0.00000000707453 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_224 | 5 | 58 | 0.000000196603 |
| Brassica carinata | ChrC02 | 6 | CH_bca_1482 | 3 | 4 | 0.000163425 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1483 | 3 | 4 | 0.000163425 |
| Brassica carinata | ChrC05 | 6 | CH_bca_166 | 7 | 24 | 0.00000000000379144 |
| Brassica carinata | ChrC06 | 6 | CH_bca_511 | 5 | 15 | 0.0000000654051 |
| Brassica napus | C05 | 6 | CH_bna_1004 | 3 | 3 | 0.0000586907 |
| Brassica napus | C08 | 6 | CH_bna_1190 | 3 | 4 | 0.00023462 |
| Brassica napus | A09 | 6 | CH_bna_1408 | 3 | 5 | 0.000586194 |
| Brassica napus | A05 | 6 | CH_bna_174 | 7 | 27 | 0.000000000019445 |
| Brassica napus | C05 | 6 | CH_bna_26 | 11 | 34 | 1.9477e-21 |
| Brassica napus | C09 | 6 | CH_bna_621 | 5 | 24 | 0.00000155121 |
| Brassica napus | C09 | 6 | CH_bna_745 | 4 | 9 | 0.00000588359 |
| Brassica napus | A09 | 6 | CH_bna_94 | 7 | 11 | 0.00000000000000730446 |
| Brassica oleracea | C8 | 6 | CH_bol_203 | 4 | 4 | 0.0000000221981 |
| Brassica oleracea | C9 | 6 | CH_bol_347 | 4 | 8 | 0.00000155011 |
| Brassica oleracea | C9 | 6 | CH_bol_487 | 4 | 14 | 0.0000220863 |
| Brassica oleracea | C5 | 6 | CH_bol_506 | 3 | 3 | 0.0000295263 |
| Brassica oleracea | C5 | 6 | CH_bol_59 | 8 | 32 | 0.0000000000000587118 |
| Brassica oleracea | C4 | 6 | CH_bol_634 | 3 | 4 | 0.000118037 |
| Brassica rapa | A09 | 6 | CH_bra_148 | 4 | 5 | 0.0000000698791 |
| Brassica rapa | A05 | 6 | CH_bra_40 | 9 | 80 | 0.000000000000337834 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_1367 | 2 | 2 | 0.000458547 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_413 | 3 | 3 | 0.0000145054 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_8 | 14 | 34 | 2.37758e-32 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_120 | 5 | 6 | 0.0000000000432576 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_187 | 4 | 4 | 0.0000000103845 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_379 | 3 | 3 | 0.0000142018 |
| Davidia involucrata | GWHABJS00000268 | 6 | CH_din_601 | 2 | 2 | 0.000150038 |
| Durio zibethinus | NW_019168381.1 | 6 | CH_dzi_160 | 3 | 3 | 0.0000000128896 |
| Eutrema salsugineum | scaffold_13 | 6 | CH_esa_289 | 3 | 3 | 0.0000226162 |
| Eutrema salsugineum | scaffold_3 | 6 | CH_esa_386 | 3 | 5 | 0.000225848 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_41 | 9 | 34 | 2.58903e-16 |
| Oryza sativa ssp. japonica | chr02 | 6 | CH_osa_44 | 8 | 25 | 1.70405e-18 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |