Functional clusters
Information
- Type InterPro
- Description Thiocyanate methyltransferase/thiol methyltransferase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 5 | CH_aar_137 | 3 | 3 | 0.0000000499425 |
| Acer truncatum | chr12 | 5 | CH_acertr_732 | 2 | 2 | 0.000211491 |
| Actinidia chinensis | Lachesis_group0 | 5 | CH_ach_319 | 2 | 2 | 0.000162964 |
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_190 | 3 | 4 | 0.0000000261395 |
| Avicennia marina | ScioBoG_12795_HRSCAF_12848 | 5 | CH_ama_218 | 2 | 3 | 0.00077594 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_95 | 4 | 8 | 0.0000000000246888 |
| Amborella trichopoda | AmTr_v1.0_scaffold00066 | 5 | CH_atr_544 | 2 | 4 | 0.000476607 |
| Brassica carinata | ChrB06 | 5 | CH_bca_649 | 3 | 3 | 0.000000383844 |
| Brassica carinata | ChrB02 | 5 | CH_bca_69 | 6 | 11 | 3.71406e-16 |
| Brassica carinata | ChrC02 | 5 | CH_bca_805 | 3 | 4 | 0.0000015352 |
| Brassica napus | C04 | 5 | CH_bna_227 | 4 | 5 | 0.000000000293512 |
| Brassica napus | A05 | 5 | CH_bna_716 | 3 | 5 | 0.00000421619 |
| Brassica oleracea | C4 | 5 | CH_bol_109 | 4 | 5 | 0.000000000109997 |
| Brassica rapa | A05 | 5 | CH_bra_184 | 3 | 4 | 0.000000387026 |
| Brassica rapa | A04 | 5 | CH_bra_601 | 2 | 2 | 0.000901558 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 5 | CH_bvu_199 | 3 | 7 | 0.000000359815 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_1035 | 2 | 3 | 0.000137561 |
| Corylus avellana | 9 | 5 | CH_cav_310 | 3 | 12 | 0.00000193921 |
| Coffea canephora | chr3 | 5 | CH_ccan_523 | 2 | 10 | 0.000191648 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_535 | 2 | 4 | 0.000454373 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_192 | 3 | 3 | 0.0000000071667 |
| Carica papaya | supercontig_151 | 5 | CH_cpa_38 | 4 | 5 | 0.0000000000128887 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2187 | 5 | CH_cqu_569 | 3 | 12 | 0.0000148075 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 5 | CH_cqu_610 | 3 | 15 | 0.0000306176 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_116 | 4 | 5 | 0.0000000000293162 |
| Davidia involucrata | GWHABJS00000016 | 5 | CH_din_532 | 2 | 2 | 0.000150038 |
| Eutrema salsugineum | scaffold_22 | 5 | CH_esa_80 | 4 | 4 | 0.00000000000662443 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_713 | 2 | 2 | 0.0000598874 |
| Magnolia biondii | Chr10 | 5 | CH_mbi_1008 | 2 | 2 | 0.000291397 |
| Malus domestica | Chr15 | 5 | CH_mdo_1177 | 2 | 3 | 0.00034128 |
| Nicotiana tabacum | Nitab4.5_0000013 | 5 | CH_nta_243 | 2 | 3 | 0.000329164 |
| Petunia axillaris | Peaxi162Scf01205 | 5 | CH_pax_518 | 2 | 3 | 0.00021106 |
| Prunus persica | Pp07 | 5 | CH_ppe_579 | 2 | 2 | 0.0000745962 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_185 | 5 | 11 | 0.00000000000070673 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_202 | 5 | 14 | 0.00000000000306179 |
| Sechium edule | LG04 | 5 | CH_sed_440 | 2 | 2 | 0.000428052 |
| Schrenkiella parvula | ch4-6 | 5 | CH_spa_17 | 5 | 5 | 2.88278e-16 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_695 | 2 | 4 | 0.000266862 |
| Tarenaya hassleriana | NW_010960188.1 | 5 | CH_tha_147 | 3 | 5 | 0.00000256064 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_564 | 2 | 2 | 0.000278772 |
| Vanilla planifolia | CM028154.1 | 5 | CH_vpl_59 | 4 | 6 | 0.00000000009076 |
| Vitis vinifera | chr5 | 5 | CH_vvi_285 | 3 | 4 | 0.00000013885 |
| Aethionema arabicum | LG-1 | 6 | CH_aar_137 | 3 | 3 | 0.0000000499425 |
| Acer truncatum | chr12 | 6 | CH_acertr_732 | 2 | 2 | 0.000211491 |
| Actinidia chinensis | Lachesis_group0 | 6 | CH_ach_319 | 2 | 2 | 0.000162964 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_190 | 3 | 4 | 0.0000000261395 |
| Avicennia marina | ScioBoG_12795_HRSCAF_12848 | 6 | CH_ama_218 | 2 | 3 | 0.00077594 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_95 | 4 | 8 | 0.0000000000246888 |
| Amborella trichopoda | AmTr_v1.0_scaffold00066 | 6 | CH_atr_544 | 2 | 4 | 0.000476607 |
| Brassica carinata | ChrB06 | 6 | CH_bca_649 | 3 | 3 | 0.000000383844 |
| Brassica carinata | ChrB02 | 6 | CH_bca_69 | 6 | 11 | 3.71406e-16 |
| Brassica carinata | ChrC02 | 6 | CH_bca_805 | 3 | 4 | 0.0000015352 |
| Brassica napus | C04 | 6 | CH_bna_227 | 4 | 5 | 0.000000000293512 |
| Brassica napus | A05 | 6 | CH_bna_716 | 3 | 5 | 0.00000421619 |
| Brassica oleracea | C4 | 6 | CH_bol_109 | 4 | 5 | 0.000000000109997 |
| Brassica rapa | A05 | 6 | CH_bra_184 | 3 | 4 | 0.000000387026 |
| Brassica rapa | A04 | 6 | CH_bra_601 | 2 | 2 | 0.000901558 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 6 | CH_bvu_199 | 3 | 7 | 0.000000359815 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_1035 | 2 | 3 | 0.000137561 |
| Corylus avellana | 9 | 6 | CH_cav_310 | 3 | 12 | 0.00000193921 |
| Coffea canephora | chr3 | 6 | CH_ccan_523 | 2 | 10 | 0.000191648 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_535 | 2 | 4 | 0.000454373 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_192 | 3 | 3 | 0.0000000071667 |
| Carica papaya | supercontig_151 | 6 | CH_cpa_38 | 4 | 5 | 0.0000000000128887 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2187 | 6 | CH_cqu_569 | 3 | 12 | 0.0000148075 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 6 | CH_cqu_610 | 3 | 15 | 0.0000306176 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_116 | 4 | 5 | 0.0000000000293162 |
| Davidia involucrata | GWHABJS00000016 | 6 | CH_din_532 | 2 | 2 | 0.000150038 |
| Eutrema salsugineum | scaffold_22 | 6 | CH_esa_80 | 4 | 4 | 0.00000000000662443 |
| Fragaria x ananassa | Fvb1-3 | 6 | CH_fan_707 | 3 | 21 | 0.0000238912 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_713 | 2 | 2 | 0.0000598874 |
| Magnolia biondii | Chr10 | 6 | CH_mbi_1008 | 2 | 2 | 0.000291397 |
| Malus domestica | Chr15 | 6 | CH_mdo_1177 | 2 | 3 | 0.00034128 |
| Nicotiana tabacum | Nitab4.5_0000013 | 6 | CH_nta_243 | 2 | 3 | 0.000329164 |
| Petunia axillaris | Peaxi162Scf01205 | 6 | CH_pax_518 | 2 | 3 | 0.00021106 |
| Prunus persica | Pp07 | 6 | CH_ppe_579 | 2 | 2 | 0.0000745962 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_185 | 5 | 11 | 0.00000000000070673 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_202 | 5 | 14 | 0.00000000000306179 |
| Sechium edule | LG04 | 6 | CH_sed_440 | 2 | 2 | 0.000428052 |
| Schrenkiella parvula | ch4-6 | 6 | CH_spa_17 | 5 | 5 | 2.88278e-16 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_695 | 2 | 4 | 0.000266862 |
| Tarenaya hassleriana | NW_010960188.1 | 6 | CH_tha_147 | 3 | 5 | 0.00000256064 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_564 | 2 | 2 | 0.000278772 |
| Vanilla planifolia | CM028154.1 | 6 | CH_vpl_59 | 4 | 6 | 0.00000000009076 |
| Vitis vinifera | chr5 | 6 | CH_vvi_285 | 3 | 4 | 0.00000013885 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |