Functional clusters
Information
- Type InterPro
- Description Beta-D-xylosidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 5 | CH_atr_164 | 4 | 5 | 0.0000000102621 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 5 | CH_atr_288 | 3 | 3 | 0.00000430731 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 5 | CH_atr_344 | 3 | 5 | 0.0000430389 |
| Brassica carinata | ChrB08 | 5 | CH_bca_23 | 8 | 8 | 6.14012e-23 |
| Brassica carinata | ChrC08 | 5 | CH_bca_348 | 4 | 4 | 0.00000000296771 |
| Capsicum annuum | PGAv.1.6.scaffold517 | 5 | CH_can_77 | 6 | 6 | 1.81868e-17 |
| Coffea canephora | chr1 | 5 | CH_ccan_585 | 2 | 2 | 0.000332195 |
| Carica papaya | supercontig_66 | 5 | CH_cpa_195 | 3 | 3 | 0.00000162684 |
| Carica papaya | supercontig_166 | 5 | CH_cpa_196 | 3 | 3 | 0.00000162684 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_875 | 3 | 3 | 0.00000233795 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_107 | 6 | 7 | 0.0000000000000325372 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_73 | 7 | 8 | 2.30196e-17 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_268 | 6 | 27 | 0.0000000000630997 |
| Malus domestica | Chr05 | 5 | CH_mdo_472 | 4 | 13 | 0.000000159405 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_329 | 4 | 27 | 0.00000162303 |
| Petunia axillaris | Peaxi162Scf00041 | 5 | CH_pax_7 | 8 | 8 | 1.7309e-23 |
| Quercus lobata | 3 | 5 | CH_qlo_24 | 15 | 23 | 1.22328e-40 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_439 | 3 | 3 | 0.000000349805 |
| Striga asiatica | scaffold67 | 5 | CH_sas_7 | 5 | 6 | 0.00000000000137783 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_604 | 3 | 8 | 0.00016825 |
| Salvia bowleyana | GWHASIU00000006 | 5 | CH_sbo_611 | 4 | 47 | 0.000192884 |
| Simmondsia chinensis | GWHAASQ00000001 | 5 | CH_sci_350 | 3 | 14 | 0.00022117 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_1326 | 3 | 3 | 0.00000161972 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_403 | 5 | 5 | 0.000000000000126863 |
| Sapria himalayana | scaffold55_3650763 | 5 | CH_shi_203 | 3 | 14 | 0.00000178469 |
| Vanilla planifolia | CM028157.1 | 5 | CH_vpl_137 | 4 | 8 | 0.0000000846925 |
| Vanilla planifolia | CM028157.1 | 5 | CH_vpl_242 | 3 | 3 | 0.00000298096 |
| Vitis vinifera | chr5 | 5 | CH_vvi_134 | 5 | 5 | 0.00000000000389312 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 6 | CH_atr_164 | 4 | 5 | 0.0000000102621 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 6 | CH_atr_288 | 3 | 3 | 0.00000430731 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 6 | CH_atr_344 | 3 | 5 | 0.0000430389 |
| Brassica carinata | ChrB08 | 6 | CH_bca_23 | 8 | 8 | 6.14012e-23 |
| Brassica carinata | ChrC08 | 6 | CH_bca_348 | 4 | 4 | 0.00000000296771 |
| Capsicum annuum | PGAv.1.6.scaffold517 | 6 | CH_can_77 | 6 | 6 | 1.81868e-17 |
| Coffea canephora | chr1 | 6 | CH_ccan_585 | 2 | 2 | 0.000332195 |
| Carica papaya | supercontig_66 | 6 | CH_cpa_195 | 3 | 3 | 0.00000162684 |
| Carica papaya | supercontig_166 | 6 | CH_cpa_196 | 3 | 3 | 0.00000162684 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_875 | 3 | 3 | 0.00000233795 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_107 | 6 | 7 | 0.0000000000000325372 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_73 | 7 | 8 | 2.30196e-17 |
| Fragaria x ananassa | Fvb5-2 | 6 | CH_fan_606 | 3 | 4 | 0.00000750507 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_268 | 6 | 27 | 0.0000000000630997 |
| Malus domestica | Chr05 | 6 | CH_mdo_472 | 4 | 13 | 0.000000159405 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_329 | 4 | 27 | 0.00000162303 |
| Petunia axillaris | Peaxi162Scf00041 | 6 | CH_pax_7 | 8 | 8 | 1.7309e-23 |
| Quercus lobata | 3 | 6 | CH_qlo_24 | 15 | 23 | 1.22328e-40 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_439 | 3 | 3 | 0.000000349805 |
| Striga asiatica | scaffold67 | 6 | CH_sas_7 | 5 | 6 | 0.00000000000137783 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_604 | 3 | 8 | 0.00016825 |
| Salvia bowleyana | GWHASIU00000006 | 6 | CH_sbo_611 | 4 | 47 | 0.000192884 |
| Simmondsia chinensis | GWHAASQ00000001 | 6 | CH_sci_350 | 3 | 14 | 0.00022117 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_1326 | 3 | 3 | 0.00000161972 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_403 | 5 | 5 | 0.000000000000126863 |
| Sapria himalayana | scaffold55_3650763 | 6 | CH_shi_203 | 3 | 14 | 0.00000178469 |
| Vanilla planifolia | CM028157.1 | 6 | CH_vpl_137 | 4 | 8 | 0.0000000846925 |
| Vanilla planifolia | CM028157.1 | 6 | CH_vpl_242 | 3 | 3 | 0.00000298096 |
| Vitis vinifera | chr5 | 6 | CH_vvi_134 | 5 | 5 | 0.00000000000389312 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |