Functional clusters
Information
- Type InterPro
- Description Glutamine amidotransferase domain containing protein ChyE-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 5 | CH_aar_152 | 3 | 3 | 0.000000124856 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_200 | 3 | 3 | 0.0000000261404 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_502 | 2 | 2 | 0.000481193 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_215 | 3 | 5 | 0.000000123109 |
| Amborella trichopoda | AmTr_v1.0_scaffold00025 | 5 | CH_atr_120 | 4 | 8 | 0.000000000526316 |
| Brassica carinata | ChrC07 | 5 | CH_bca_591 | 3 | 3 | 0.000000196034 |
| Brassica oleracea | C3 | 5 | CH_bol_860 | 2 | 2 | 0.000686409 |
| Brassica oleracea | C8 | 5 | CH_bol_861 | 2 | 2 | 0.000686409 |
| Brassica rapa | A08 | 5 | CH_bra_580 | 2 | 3 | 0.00064397 |
| Brassica rapa | A09 | 5 | CH_bra_581 | 2 | 2 | 0.00064397 |
| Cicer arietinum L. | Ca_LG2_v3 | 5 | CH_car_176 | 3 | 14 | 0.00003304 |
| Ceratophyllum demersum | 1 | 5 | CH_cde_90 | 3 | 3 | 0.000000187141 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_731 | 2 | 2 | 0.000414723 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_229 | 3 | 3 | 0.000000080191 |
| Davidia involucrata | GWHABJS00000085 | 5 | CH_din_320 | 3 | 4 | 0.00000126049 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_699 | 2 | 2 | 0.000269233 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_1290 | 2 | 2 | 0.000351165 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_171 | 3 | 3 | 0.0000000869853 |
| Hydrangea macrophylla | Hma1.2p1_0908F.1 | 5 | CH_hma_601 | 2 | 3 | 0.000333259 |
| Lupinus albus | Lalb_Chr09 | 5 | CH_lal_727 | 2 | 2 | 0.000524824 |
| Nelumbo nucifera | chr8 | 5 | CH_nnu_16 | 9 | 12 | 4.52417e-26 |
| Nelumbo nucifera | chr2 | 5 | CH_nnu_254 | 3 | 3 | 0.00000158357 |
| Petunia axillaris | Peaxi162Scf00038 | 5 | CH_pax_719 | 2 | 2 | 0.000703556 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_1047 | 2 | 2 | 0.000967961 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_1087 | 3 | 3 | 0.000000124594 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_1088 | 3 | 3 | 0.000000124594 |
| Schrenkiella parvula | ch7-5 | 5 | CH_spa_301 | 2 | 2 | 0.000236202 |
| Trochodendron aralioides | group10 | 5 | CH_tar_263 | 3 | 3 | 0.000000108135 |
| Tarenaya hassleriana | NW_010971389.1 | 5 | CH_tha_107 | 3 | 3 | 0.000000146363 |
| Aethionema arabicum | LG-2 | 6 | CH_aar_152 | 3 | 3 | 0.000000124856 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_200 | 3 | 3 | 0.0000000261404 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_502 | 2 | 2 | 0.000481193 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_215 | 3 | 5 | 0.000000123109 |
| Amborella trichopoda | AmTr_v1.0_scaffold00025 | 6 | CH_atr_120 | 4 | 8 | 0.000000000526316 |
| Brassica carinata | ChrC07 | 6 | CH_bca_591 | 3 | 3 | 0.000000196034 |
| Brassica oleracea | C3 | 6 | CH_bol_860 | 2 | 2 | 0.000686409 |
| Brassica oleracea | C8 | 6 | CH_bol_861 | 2 | 2 | 0.000686409 |
| Brassica rapa | A08 | 6 | CH_bra_580 | 2 | 3 | 0.00064397 |
| Brassica rapa | A09 | 6 | CH_bra_581 | 2 | 2 | 0.00064397 |
| Cicer arietinum L. | Ca_LG2_v3 | 6 | CH_car_176 | 3 | 14 | 0.00003304 |
| Ceratophyllum demersum | 1 | 6 | CH_cde_90 | 3 | 3 | 0.000000187141 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_731 | 2 | 2 | 0.000414723 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_229 | 3 | 3 | 0.000000080191 |
| Davidia involucrata | GWHABJS00000085 | 6 | CH_din_320 | 3 | 4 | 0.00000126049 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_699 | 2 | 2 | 0.000269233 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_1290 | 2 | 2 | 0.000351165 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_171 | 3 | 3 | 0.0000000869853 |
| Hydrangea macrophylla | Hma1.2p1_0908F.1 | 6 | CH_hma_601 | 2 | 3 | 0.000333259 |
| Lupinus albus | Lalb_Chr09 | 6 | CH_lal_727 | 2 | 2 | 0.000524824 |
| Nelumbo nucifera | chr8 | 6 | CH_nnu_16 | 9 | 12 | 4.52417e-26 |
| Nelumbo nucifera | chr2 | 6 | CH_nnu_254 | 3 | 3 | 0.00000158357 |
| Petunia axillaris | Peaxi162Scf00038 | 6 | CH_pax_719 | 2 | 2 | 0.000703556 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_1047 | 2 | 2 | 0.000967961 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_1087 | 3 | 3 | 0.000000124594 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_1088 | 3 | 3 | 0.000000124594 |
| Schrenkiella parvula | ch7-5 | 6 | CH_spa_301 | 2 | 2 | 0.000236202 |
| Trochodendron aralioides | group10 | 6 | CH_tar_263 | 3 | 3 | 0.000000108135 |
| Tarenaya hassleriana | NW_010971389.1 | 6 | CH_tha_107 | 3 | 3 | 0.000000146363 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |