Functional clusters
Information
- Type InterPro
- Description Tetraspani, plant
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica carinata | ChrB07 | 5 | CH_bca_747 | 4 | 9 | 0.000000920834 |
Citrus clementina | scaffold_3 | 5 | CH_ccl_135 | 5 | 5 | 0.00000000000148376 |
Citrus clementina | scaffold_1 | 5 | CH_ccl_457 | 3 | 4 | 0.0000226007 |
Chenopodium quinoa | C_Quinoa_Scaffold_1214 | 5 | CH_cqu_491 | 3 | 3 | 0.00000383916 |
Chenopodium quinoa | C_Quinoa_Scaffold_4244 | 5 | CH_cqu_575 | 3 | 4 | 0.0000153516 |
Erythranthe guttata | scaffold_9 | 5 | CH_egut_35 | 11 | 19 | 8.69412e-27 |
Magnolia biondii | Chr14 | 5 | CH_mbi_694 | 3 | 6 | 0.0000257399 |
Olea europaea | chr11 | 5 | CH_oeu_237 | 3 | 4 | 0.00000777673 |
Punica granatum | NC_045128.1 | 5 | CH_pgr_360 | 3 | 5 | 0.0000139283 |
Prunus persica | Pp01 | 5 | CH_ppe_385 | 3 | 3 | 0.000000701166 |
Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_724 | 3 | 5 | 0.00000133473 |
Rhododendron simsii | chr01 | 5 | CH_rsi_583 | 3 | 4 | 0.0000169842 |
Salix brachista | GWHAAZH00000015 | 5 | CH_sbr_374 | 3 | 4 | 0.00000866988 |
Sequoiadendron giganteum | chr3 | 5 | CH_sgi_28 | 17 | 36 | 3.95279e-43 |
Sequoiadendron giganteum | chr10 | 5 | CH_sgi_856 | 4 | 4 | 0.00000000608726 |
Schrenkiella parvula | ch4-2 | 5 | CH_spa_177 | 3 | 3 | 0.00000758792 |
Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_226 | 4 | 4 | 0.00000000073483 |
Trifolium pratense | Tp57577_TGAC_v2_scaf_171 | 5 | CH_tpr_105 | 4 | 4 | 0.000000000273295 |
Tripterygium wilfordii | NC_052251.1 | 5 | CH_twi_436 | 3 | 11 | 0.000279443 |
Brassica carinata | ChrB07 | 6 | CH_bca_747 | 4 | 9 | 0.000000920834 |
Citrus clementina | scaffold_3 | 6 | CH_ccl_135 | 5 | 5 | 0.00000000000148376 |
Citrus clementina | scaffold_1 | 6 | CH_ccl_457 | 3 | 4 | 0.0000226007 |
Chenopodium quinoa | C_Quinoa_Scaffold_1214 | 6 | CH_cqu_491 | 3 | 3 | 0.00000383916 |
Chenopodium quinoa | C_Quinoa_Scaffold_4244 | 6 | CH_cqu_575 | 3 | 4 | 0.0000153516 |
Erythranthe guttata | scaffold_9 | 6 | CH_egut_35 | 11 | 19 | 8.69412e-27 |
Magnolia biondii | Chr14 | 6 | CH_mbi_694 | 3 | 6 | 0.0000257399 |
Olea europaea | chr11 | 6 | CH_oeu_237 | 3 | 4 | 0.00000777673 |
Punica granatum | NC_045128.1 | 6 | CH_pgr_360 | 3 | 5 | 0.0000139283 |
Prunus persica | Pp01 | 6 | CH_ppe_385 | 3 | 3 | 0.000000701166 |
Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_724 | 3 | 5 | 0.00000133473 |
Rhododendron simsii | chr01 | 6 | CH_rsi_583 | 3 | 4 | 0.0000169842 |
Salix brachista | GWHAAZH00000015 | 6 | CH_sbr_374 | 3 | 4 | 0.00000866988 |
Sequoiadendron giganteum | chr3 | 6 | CH_sgi_28 | 17 | 36 | 3.95279e-43 |
Sequoiadendron giganteum | chr10 | 6 | CH_sgi_856 | 4 | 4 | 0.00000000608726 |
Schrenkiella parvula | ch4-2 | 6 | CH_spa_177 | 3 | 3 | 0.00000758792 |
Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_226 | 4 | 4 | 0.00000000073483 |
Trifolium pratense | Tp57577_TGAC_v2_scaf_171 | 6 | CH_tpr_105 | 4 | 4 | 0.000000000273295 |
Tripterygium wilfordii | NC_052251.1 | 6 | CH_twi_436 | 3 | 11 | 0.000279443 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |