Functional clusters

Information

  • Type InterPro
  • Description Tetraspani, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB07 5 CH_bca_747 4 9 0.000000920834
Citrus clementina scaffold_3 5 CH_ccl_135 5 5 0.00000000000148376
Citrus clementina scaffold_1 5 CH_ccl_457 3 4 0.0000226007
Chenopodium quinoa C_Quinoa_Scaffold_1214 5 CH_cqu_491 3 3 0.00000383916
Chenopodium quinoa C_Quinoa_Scaffold_4244 5 CH_cqu_575 3 4 0.0000153516
Erythranthe guttata scaffold_9 5 CH_egut_35 11 19 8.69412e-27
Magnolia biondii Chr14 5 CH_mbi_694 3 6 0.0000257399
Olea europaea chr11 5 CH_oeu_237 3 4 0.00000777673
Punica granatum NC_045128.1 5 CH_pgr_360 3 5 0.0000139283
Prunus persica Pp01 5 CH_ppe_385 3 3 0.000000701166
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_724 3 5 0.00000133473
Rhododendron simsii chr01 5 CH_rsi_583 3 4 0.0000169842
Salix brachista GWHAAZH00000015 5 CH_sbr_374 3 4 0.00000866988
Sequoiadendron giganteum chr3 5 CH_sgi_28 17 36 3.95279e-43
Sequoiadendron giganteum chr10 5 CH_sgi_856 4 4 0.00000000608726
Schrenkiella parvula ch4-2 5 CH_spa_177 3 3 0.00000758792
Solanum tuberosum ST4.03ch03 5 CH_stu_226 4 4 0.00000000073483
Trifolium pratense Tp57577_TGAC_v2_scaf_171 5 CH_tpr_105 4 4 0.000000000273295
Tripterygium wilfordii NC_052251.1 5 CH_twi_436 3 11 0.000279443
Brassica carinata ChrB07 6 CH_bca_747 4 9 0.000000920834
Citrus clementina scaffold_3 6 CH_ccl_135 5 5 0.00000000000148376
Citrus clementina scaffold_1 6 CH_ccl_457 3 4 0.0000226007
Chenopodium quinoa C_Quinoa_Scaffold_1214 6 CH_cqu_491 3 3 0.00000383916
Chenopodium quinoa C_Quinoa_Scaffold_4244 6 CH_cqu_575 3 4 0.0000153516
Erythranthe guttata scaffold_9 6 CH_egut_35 11 19 8.69412e-27
Magnolia biondii Chr14 6 CH_mbi_694 3 6 0.0000257399
Olea europaea chr11 6 CH_oeu_237 3 4 0.00000777673
Punica granatum NC_045128.1 6 CH_pgr_360 3 5 0.0000139283
Prunus persica Pp01 6 CH_ppe_385 3 3 0.000000701166
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_724 3 5 0.00000133473
Rhododendron simsii chr01 6 CH_rsi_583 3 4 0.0000169842
Salix brachista GWHAAZH00000015 6 CH_sbr_374 3 4 0.00000866988
Sequoiadendron giganteum chr3 6 CH_sgi_28 17 36 3.95279e-43
Sequoiadendron giganteum chr10 6 CH_sgi_856 4 4 0.00000000608726
Schrenkiella parvula ch4-2 6 CH_spa_177 3 3 0.00000758792
Solanum tuberosum ST4.03ch03 6 CH_stu_226 4 4 0.00000000073483
Trifolium pratense Tp57577_TGAC_v2_scaf_171 6 CH_tpr_105 4 4 0.000000000273295
Tripterygium wilfordii NC_052251.1 6 CH_twi_436 3 11 0.000279443

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001