Functional clusters

Information

  • Type InterPro
  • Description Glycoside hydrolase family 17, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 5 CH_acertr_102 6 8 0.0000000000102532
Arabidopsis lyrata scaffold_6 5 CH_aly_140 7 23 0.000000000601579
Arabidopsis lyrata scaffold_5 5 CH_aly_706 3 4 0.000893232
Avicennia marina ScioBoG_4119_HRSCAF_4138 5 CH_ama_147 3 3 0.000218575
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 5 CH_arhy_1076 3 3 0.000274483
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_352 5 5 0.000000000671684
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_732 4 6 0.00000645521
Arabidopsis thaliana Chr3 5 CH_ath_526 3 6 0.000288099
Amborella trichopoda AmTr_v1.0_scaffold00053 5 CH_atr_143 5 7 0.00000000360399
Brassica carinata ChrC07 5 CH_bca_1409 5 29 0.000117824
Brassica carinata ChrC03 5 CH_bca_697 7 57 0.000000628365
Brassica carinata ChrB02 5 CH_bca_84 7 7 0.00000000000000254606
Brassica carinata ChrC02 5 CH_bca_982 5 17 0.00000623819
Brassica napus C04 5 CH_bna_215 7 20 0.000000000176304
Brassica napus A04 5 CH_bna_275 5 5 0.000000000992752
Brassica napus C08 5 CH_bna_43 9 12 1.15336e-18
Brassica napus A09 5 CH_bna_557 4 4 0.000000644368
Brassica oleracea C8 5 CH_bol_263 5 12 0.000000172461
Brassica oleracea C4 5 CH_bol_381 5 19 0.00000251347
Brassica rapa A04 5 CH_bra_19 7 7 9.78951e-16
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_6 15 17 1.21711e-35
Camellia sinensis var. sinensis Chr10 5 CH_camsi_1009 5 41 0.000109708
Camellia sinensis var. sinensis Chr13 5 CH_camsi_1562 3 5 0.000971331
Cannabis sativa NC_044372.1 5 CH_cansat_164 5 9 0.0000000115171
Capsicum annuum PGAv.1.6.scaffold1366 5 CH_can_121 6 6 0.000000000000282556
Capsicum annuum PGAv.1.6.scaffold307 5 CH_can_419 4 7 0.00000485208
Corylus avellana 10 5 CH_cav_268 4 4 0.000000461172
Corylus avellana 11 5 CH_cav_663 3 3 0.000231331
Corylus avellana 6 5 CH_cav_849 3 4 0.000923905
Chara braunii BFEA01000526 5 CH_cbr_106 3 3 0.00000128048
Coffea canephora chr6 5 CH_ccan_276 4 39 0.00000697895
Coffea canephora chr1 5 CH_ccan_385 4 61 0.0000441908
Citrus clementina scaffold_9 5 CH_ccl_247 5 7 0.00000000975005
Carpinus fangiana Cfa07 5 CH_cfa_313 4 6 0.00000347768
Carpinus fangiana Cfa01 5 CH_cfa_444 3 3 0.000139513
Cardamine hirsuta Chr6 5 CH_chi_272 7 53 0.000000143996
Cardamine hirsuta Chr5 5 CH_chi_566 3 3 0.000149247
Carya illinoinensis Chr09 5 CH_cil_296 5 7 0.0000000324176
Carya illinoinensis Chr13 5 CH_cil_724 3 3 0.000343704
Carya illinoinensis Chr14 5 CH_cil_725 3 3 0.000343704
Citrullus lanatus CG_Chr03 5 CH_cla_357 3 4 0.000541363
Carica papaya supercontig_49 5 CH_cpa_65 5 5 0.000000000403198
Chenopodium quinoa C_Quinoa_Scaffold_2088 5 CH_cqu_212 6 11 0.000000000685037
Chenopodium quinoa C_Quinoa_Scaffold_4462 5 CH_cqu_88 7 7 0.00000000000000258407
Capsella rubella scaffold_5 5 CH_cru_269 4 4 0.000000293064
Cucumis sativus L. chr1 5 CH_csa_24 10 10 2.72403e-23
Daucus carota DCARv2_Chr3 5 CH_dca_471 3 3 0.000127065
Davidia involucrata GWHABJS00000007 5 CH_din_36 9 9 7.90987e-21
Durio zibethinus NW_019168481.1 5 CH_dzi_272 4 5 0.00000191367
Eucalyptus grandis Chr02 5 CH_egr_1098 3 3 0.0000589882
Erythranthe guttata scaffold_10 5 CH_egut_126 6 6 0.000000000000937952
Fragaria vesca Fvb4 5 CH_fve_476 4 7 0.00000973199
Fragaria vesca Fvb2 5 CH_fve_806 3 4 0.000676079
Gossypium hirsutum A06 5 CH_ghi_1190 3 3 0.000554699
Glycine max Gm16 5 CH_gma_435 4 5 0.00000283797
Glycine max Gm11 5 CH_gma_779 3 3 0.000318617
Gossypium raimondii Chr10 5 CH_gra_292 4 4 0.000000531918
Helianthus annuus HanXRQChr06 5 CH_han_237 6 9 0.0000000000451105
Hydrangea macrophylla Hma1.2p1_0110F.1 5 CH_hma_29 6 7 0.00000000000126485
Lupinus albus Lalb_Chr01 5 CH_lal_49 7 8 0.0000000000000193718
Lonicera japonica GWHAAZE00000005 5 CH_lonja_995 3 3 0.000294497
Lonicera japonica GWHAAZE00000001 5 CH_lonja_996 3 3 0.000294497
Lactuca sativa Lsat_1_v8_lg_1 5 CH_lsa_647 3 3 0.000128838
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_833 3 4 0.000514782
Magnolia biondii Chr09 5 CH_mbi_133 6 6 0.000000000000246118
Magnolia biondii Chr05 5 CH_mbi_20 11 11 6.48649e-28
Magnolia biondii Chr07 5 CH_mbi_834 3 3 0.000109171
Malus domestica Chr07 5 CH_mdo_1445 3 4 0.000851202
Malus domestica Chr14 5 CH_mdo_605 5 15 0.00000150838
Malus domestica Chr02 5 CH_mdo_677 4 6 0.00000495652
Marchantia polymorpha scaffold_9 5 CH_mpo_124 3 3 0.0000324045
Marchantia polymorpha scaffold_42 5 CH_mpo_162 3 4 0.000129503
Medicago truncatula chr2 5 CH_mtr_1256 3 4 0.000382712
Medicago truncatula chr4 5 CH_mtr_242 7 14 0.000000000000635083
Nelumbo nucifera chr7 5 CH_nnu_63 7 11 0.000000000000526076
Nelumbo nucifera chr2 5 CH_nnu_64 7 11 0.000000000000526076
Oryza sativa ssp. japonica chr01 5 CH_osa_37 12 46 2.55323e-19
Petunia axillaris Peaxi162Scf00444 5 CH_pax_491 3 3 0.000105363
Petunia axillaris Peaxi162Scf00032 5 CH_pax_601 3 4 0.000420969
Punica granatum NC_045128.1 5 CH_pgr_527 3 4 0.000333419
Prunus persica Pp07 5 CH_ppe_158 6 6 0.000000000000936333
Prunus persica Pp07 5 CH_ppe_819 3 4 0.000694363
Pisum sativum chr7LG7 5 CH_psa_773 4 22 0.000966358
Papaver somniferum NC_039361.1 5 CH_pso_107 7 8 2.38675e-16
Papaver somniferum NC_039358.1 5 CH_pso_1183 3 5 0.000601295
Papaver somniferum NC_039363.1 5 CH_pso_441 4 4 0.0000000515464
Papaver somniferum NC_039365.1 5 CH_pso_862 3 3 0.0000602082
Populus trichocarpa Chr14 5 CH_ptr_25 14 18 9.88878e-30
Quercus lobata 11 5 CH_qlo_1005 6 36 0.00000261621
Quercus lobata 3 5 CH_qlo_1857 3 4 0.000993368
Quercus lobata 1 5 CH_qlo_396 6 6 0.00000000000140539
Quercus lobata 7 5 CH_qlo_557 7 23 0.000000000581682
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_1070 3 3 0.000104129
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_222 8 23 0.00000000000012288
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_300 6 9 0.0000000000156731
Rhododendron simsii chr01 5 CH_rsi_63 10 12 2.16892e-22
Rhododendron simsii chr04 5 CH_rsi_945 3 4 0.00061897
Salvia bowleyana GWHASIU00000002 5 CH_sbo_100 11 62 4.38733e-16
Salvia bowleyana GWHASIU00000005 5 CH_sbo_83 12 65 4.10755e-18
Sechium edule LG08 5 CH_sed_207 4 4 0.00000118578
Sechium edule LG09 5 CH_sed_4 17 22 1.13158e-36
Sequoiadendron giganteum chr6 5 CH_sgi_1184 4 4 0.000000399097
Sequoiadendron giganteum chr3 5 CH_sgi_129 12 18 3.46882e-25
Sequoiadendron giganteum chr8 5 CH_sgi_221 9 11 2.72703e-19
Sequoiadendron giganteum chr1 5 CH_sgi_717 5 5 0.000000000680523
Solanum lycopersicum SL4.0ch01 5 CH_sly_315 4 4 0.000000151603
Solanum lycopersicum SL4.0ch11 5 CH_sly_655 3 3 0.000107616
Schrenkiella parvula ch5-1 5 CH_spa_263 3 3 0.000160834
Solanum pennellii Spenn-ch01 5 CH_spe_589 3 3 0.0000618012
Solanum tuberosum ST4.03ch01 5 CH_stu_260 5 7 0.00000000496618
Solanum tuberosum ST4.03ch01 5 CH_stu_846 3 4 0.000485667
Trochodendron aralioides group3 5 CH_tar_145 5 5 0.00000000101588
Trochodendron aralioides group2 5 CH_tar_317 4 4 0.000000528736
Theobroma cacao Chromosome_9 5 CH_tca_718 4 18 0.000631733
Vigna mungo CM024072.1 5 CH_vmu_188 4 4 0.000000276038
Vanilla planifolia CM028152.1 5 CH_vpl_40 6 6 0.00000000000078769
Vitis vinifera chr8 5 CH_vvi_140 6 8 0.00000000000839711
Vitis vinifera chr6 5 CH_vvi_546 3 3 0.0000996314
Zea mays 3 5 CH_zma_237 4 6 0.00000273173
Acer truncatum chr1 6 CH_acertr_102 6 8 0.0000000000102532
Arabidopsis lyrata scaffold_6 6 CH_aly_140 7 23 0.000000000601579
Arabidopsis lyrata scaffold_5 6 CH_aly_706 3 4 0.000893232
Avicennia marina ScioBoG_4119_HRSCAF_4138 6 CH_ama_147 3 3 0.000218575
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 6 CH_arhy_1076 3 3 0.000274483
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_352 5 5 0.000000000671684
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_732 4 6 0.00000645521
Arabidopsis thaliana Chr3 6 CH_ath_526 3 6 0.000288099
Amborella trichopoda AmTr_v1.0_scaffold00053 6 CH_atr_143 5 7 0.00000000360399
Brassica carinata ChrC07 6 CH_bca_1409 5 29 0.000117824
Brassica carinata ChrC03 6 CH_bca_697 7 57 0.000000628365
Brassica carinata ChrB02 6 CH_bca_84 7 7 0.00000000000000254606
Brassica carinata ChrC02 6 CH_bca_982 5 17 0.00000623819
Brassica napus C04 6 CH_bna_215 7 20 0.000000000176304
Brassica napus A04 6 CH_bna_275 5 5 0.000000000992752
Brassica napus C08 6 CH_bna_43 9 12 1.15336e-18
Brassica napus A09 6 CH_bna_557 4 4 0.000000644368
Brassica oleracea C8 6 CH_bol_263 5 12 0.000000172461
Brassica oleracea C4 6 CH_bol_381 5 19 0.00000251347
Brassica rapa A04 6 CH_bra_19 7 7 9.78951e-16
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_6 15 17 1.21711e-35
Camellia sinensis var. sinensis Chr10 6 CH_camsi_1009 5 41 0.000109708
Camellia sinensis var. sinensis Chr13 6 CH_camsi_1562 3 5 0.000971331
Cannabis sativa NC_044372.1 6 CH_cansat_164 5 9 0.0000000115171
Capsicum annuum PGAv.1.6.scaffold1366 6 CH_can_121 6 6 0.000000000000282556
Capsicum annuum PGAv.1.6.scaffold307 6 CH_can_419 4 7 0.00000485208
Corylus avellana 10 6 CH_cav_268 4 4 0.000000461172
Corylus avellana 11 6 CH_cav_663 3 3 0.000231331
Corylus avellana 6 6 CH_cav_849 3 4 0.000923905
Chara braunii BFEA01000526 6 CH_cbr_106 3 3 0.00000128048
Coffea canephora chr6 6 CH_ccan_276 4 39 0.00000697895
Coffea canephora chr1 6 CH_ccan_385 4 61 0.0000441908
Citrus clementina scaffold_9 6 CH_ccl_247 5 7 0.00000000975005
Carpinus fangiana Cfa07 6 CH_cfa_313 4 6 0.00000347768
Carpinus fangiana Cfa01 6 CH_cfa_444 3 3 0.000139513
Cardamine hirsuta Chr6 6 CH_chi_272 7 53 0.000000143996
Cardamine hirsuta Chr5 6 CH_chi_566 3 3 0.000149247
Carya illinoinensis Chr09 6 CH_cil_296 5 7 0.0000000324176
Carya illinoinensis Chr13 6 CH_cil_724 3 3 0.000343704
Carya illinoinensis Chr14 6 CH_cil_725 3 3 0.000343704
Citrullus lanatus CG_Chr03 6 CH_cla_357 3 4 0.000541363
Carica papaya supercontig_49 6 CH_cpa_65 5 5 0.000000000403198
Chenopodium quinoa C_Quinoa_Scaffold_2088 6 CH_cqu_212 6 11 0.000000000685037
Chenopodium quinoa C_Quinoa_Scaffold_4462 6 CH_cqu_88 7 7 0.00000000000000258407
Capsella rubella scaffold_5 6 CH_cru_269 4 4 0.000000293064
Cucumis sativus L. chr1 6 CH_csa_24 10 10 2.72403e-23
Daucus carota DCARv2_Chr3 6 CH_dca_471 3 3 0.000127065
Davidia involucrata GWHABJS00000007 6 CH_din_36 9 9 7.90987e-21
Durio zibethinus NW_019168481.1 6 CH_dzi_272 4 5 0.00000191367
Eucalyptus grandis Chr02 6 CH_egr_1098 3 3 0.0000589882
Erythranthe guttata scaffold_10 6 CH_egut_126 6 6 0.000000000000937952
Fragaria x ananassa Fvb7-1 6 CH_fan_1094 3 3 0.000550787
Fragaria x ananassa Fvb1-3 6 CH_fan_1095 3 3 0.000550787
Fragaria x ananassa Fvb1-2 6 CH_fan_1096 3 3 0.000550787
Fragaria x ananassa Fvb2-4 6 CH_fan_440 4 4 0.000000937639
Fragaria vesca Fvb4 6 CH_fve_476 4 7 0.00000973199
Fragaria vesca Fvb2 6 CH_fve_806 3 4 0.000676079
Gossypium hirsutum A06 6 CH_ghi_1190 3 3 0.000554699
Glycine max Gm16 6 CH_gma_435 4 5 0.00000283797
Glycine max Gm11 6 CH_gma_779 3 3 0.000318617
Gossypium raimondii Chr10 6 CH_gra_292 4 4 0.000000531918
Helianthus annuus HanXRQChr06 6 CH_han_237 6 9 0.0000000000451105
Hydrangea macrophylla Hma1.2p1_0110F.1 6 CH_hma_29 6 7 0.00000000000126485
Lupinus albus Lalb_Chr01 6 CH_lal_49 7 8 0.0000000000000193718
Lonicera japonica GWHAAZE00000005 6 CH_lonja_995 3 3 0.000294497
Lonicera japonica GWHAAZE00000001 6 CH_lonja_996 3 3 0.000294497
Lactuca sativa Lsat_1_v8_lg_1 6 CH_lsa_647 3 3 0.000128838
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_833 3 4 0.000514782
Magnolia biondii Chr09 6 CH_mbi_133 6 6 0.000000000000246118
Magnolia biondii Chr05 6 CH_mbi_20 11 11 6.48649e-28
Magnolia biondii Chr07 6 CH_mbi_834 3 3 0.000109171
Malus domestica Chr07 6 CH_mdo_1445 3 4 0.000851202
Malus domestica Chr14 6 CH_mdo_605 5 15 0.00000150838
Malus domestica Chr02 6 CH_mdo_677 4 6 0.00000495652
Marchantia polymorpha scaffold_9 6 CH_mpo_124 3 3 0.0000324045
Marchantia polymorpha scaffold_42 6 CH_mpo_162 3 4 0.000129503
Medicago truncatula chr2 6 CH_mtr_1256 3 4 0.000382712
Medicago truncatula chr4 6 CH_mtr_242 7 14 0.000000000000635083
Nelumbo nucifera chr7 6 CH_nnu_63 7 11 0.000000000000526076
Nelumbo nucifera chr2 6 CH_nnu_64 7 11 0.000000000000526076
Oryza sativa ssp. japonica chr01 6 CH_osa_37 12 46 2.55323e-19
Petunia axillaris Peaxi162Scf00444 6 CH_pax_491 3 3 0.000105363
Petunia axillaris Peaxi162Scf00032 6 CH_pax_601 3 4 0.000420969
Punica granatum NC_045128.1 6 CH_pgr_527 3 4 0.000333419
Prunus persica Pp07 6 CH_ppe_158 6 6 0.000000000000936333
Prunus persica Pp07 6 CH_ppe_819 3 4 0.000694363
Pisum sativum chr7LG7 6 CH_psa_773 4 22 0.000966358
Papaver somniferum NC_039361.1 6 CH_pso_107 7 8 2.38675e-16
Papaver somniferum NC_039358.1 6 CH_pso_1183 3 5 0.000601295
Papaver somniferum NC_039363.1 6 CH_pso_441 4 4 0.0000000515464
Papaver somniferum NC_039365.1 6 CH_pso_862 3 3 0.0000602082
Populus trichocarpa Chr14 6 CH_ptr_25 14 18 9.88878e-30
Quercus lobata 11 6 CH_qlo_1005 6 36 0.00000261621
Quercus lobata 3 6 CH_qlo_1857 3 4 0.000993368
Quercus lobata 1 6 CH_qlo_396 6 6 0.00000000000140539
Quercus lobata 7 6 CH_qlo_557 7 23 0.000000000581682
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_1070 3 3 0.000104129
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_222 8 23 0.00000000000012288
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_300 6 9 0.0000000000156731
Rhododendron simsii chr01 6 CH_rsi_63 10 12 2.16892e-22
Rhododendron simsii chr04 6 CH_rsi_945 3 4 0.00061897
Salvia bowleyana GWHASIU00000002 6 CH_sbo_100 11 62 4.38733e-16
Salvia bowleyana GWHASIU00000005 6 CH_sbo_83 12 65 4.10755e-18
Sechium edule LG08 6 CH_sed_207 4 4 0.00000118578
Sechium edule LG09 6 CH_sed_4 17 22 1.13158e-36
Sequoiadendron giganteum chr6 6 CH_sgi_1184 4 4 0.000000399097
Sequoiadendron giganteum chr3 6 CH_sgi_129 12 18 3.46882e-25
Sequoiadendron giganteum chr8 6 CH_sgi_221 9 11 2.72703e-19
Sequoiadendron giganteum chr1 6 CH_sgi_717 5 5 0.000000000680523
Solanum lycopersicum SL4.0ch01 6 CH_sly_315 4 4 0.000000151603
Solanum lycopersicum SL4.0ch11 6 CH_sly_655 3 3 0.000107616
Schrenkiella parvula ch5-1 6 CH_spa_263 3 3 0.000160834
Solanum pennellii Spenn-ch01 6 CH_spe_589 3 3 0.0000618012
Solanum tuberosum ST4.03ch01 6 CH_stu_260 5 7 0.00000000496618
Solanum tuberosum ST4.03ch01 6 CH_stu_846 3 4 0.000485667
Trochodendron aralioides group3 6 CH_tar_145 5 5 0.00000000101588
Trochodendron aralioides group2 6 CH_tar_317 4 4 0.000000528736
Theobroma cacao Chromosome_9 6 CH_tca_718 4 18 0.000631733
Vigna mungo CM024072.1 6 CH_vmu_188 4 4 0.000000276038
Vanilla planifolia CM028152.1 6 CH_vpl_40 6 6 0.00000000000078769
Vitis vinifera chr8 6 CH_vvi_140 6 8 0.00000000000839711
Vitis vinifera chr6 6 CH_vvi_546 3 3 0.0000996314
Zea mays 3 6 CH_zma_237 4 6 0.00000273173

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001