Functional clusters
Information
- Type InterPro
- Description Classical arabinogalactan protein
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_62 | 6 | 6 | 1.2775e-19 |
| Cannabis sativa | NC_044377.1 | 5 | CH_cansat_42 | 5 | 5 | 1.39464e-16 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_312 | 2 | 2 | 0.00023349 |
| Corylus avellana | 9 | 5 | CH_cav_331 | 3 | 7 | 0.00000308499 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_254 | 3 | 4 | 0.000000344124 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_364 | 3 | 3 | 0.000000322727 |
| Carica papaya | supercontig_42 | 5 | CH_cpa_528 | 2 | 2 | 0.000285198 |
| Lotus japonicus | chr4 | 5 | CH_lja_548 | 2 | 2 | 0.000429046 |
| Manihot esculenta | Chromosome07 | 5 | CH_mes_328 | 3 | 3 | 0.000000469831 |
| Medicago truncatula | chr4 | 5 | CH_mtr_217 | 5 | 6 | 0.000000000000165031 |
| Medicago truncatula | chr6 | 5 | CH_mtr_986 | 3 | 9 | 0.0000607694 |
| Prunus persica | Pp08 | 5 | CH_ppe_47 | 8 | 9 | 1.80486e-23 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_85 | 5 | 17 | 0.00000000000721112 |
| Populus trichocarpa | Chr17 | 5 | CH_ptr_810 | 2 | 2 | 0.000867002 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_811 | 2 | 2 | 0.000867002 |
| Phaseolus vulgaris | Chr06 | 5 | CH_pvu_696 | 2 | 2 | 0.000734727 |
| Quercus lobata | 11 | 5 | CH_qlo_403 | 4 | 4 | 0.00000000000206444 |
| Solanum pennellii | Spenn-ch12 | 5 | CH_spe_100 | 4 | 4 | 0.00000000000396011 |
| Solanum tuberosum | ST4.03ch12 | 5 | CH_stu_184 | 4 | 5 | 0.0000000000302795 |
| Vigna mungo | CM024075.1 | 5 | CH_vmu_477 | 2 | 2 | 0.000193842 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_62 | 6 | 6 | 1.2775e-19 |
| Cannabis sativa | NC_044377.1 | 6 | CH_cansat_42 | 5 | 5 | 1.39464e-16 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_312 | 2 | 2 | 0.00023349 |
| Corylus avellana | 9 | 6 | CH_cav_331 | 3 | 7 | 0.00000308499 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_254 | 3 | 4 | 0.000000344124 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_364 | 3 | 3 | 0.000000322727 |
| Carica papaya | supercontig_42 | 6 | CH_cpa_528 | 2 | 2 | 0.000285198 |
| Lotus japonicus | chr4 | 6 | CH_lja_548 | 2 | 2 | 0.000429046 |
| Manihot esculenta | Chromosome07 | 6 | CH_mes_328 | 3 | 3 | 0.000000469831 |
| Medicago truncatula | chr4 | 6 | CH_mtr_217 | 5 | 6 | 0.000000000000165031 |
| Medicago truncatula | chr6 | 6 | CH_mtr_986 | 3 | 9 | 0.0000607694 |
| Prunus persica | Pp08 | 6 | CH_ppe_47 | 8 | 9 | 1.80486e-23 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_85 | 5 | 17 | 0.00000000000721112 |
| Populus trichocarpa | Chr17 | 6 | CH_ptr_810 | 2 | 2 | 0.000867002 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_811 | 2 | 2 | 0.000867002 |
| Phaseolus vulgaris | Chr06 | 6 | CH_pvu_696 | 2 | 2 | 0.000734727 |
| Quercus lobata | 11 | 6 | CH_qlo_403 | 4 | 4 | 0.00000000000206444 |
| Solanum pennellii | Spenn-ch12 | 6 | CH_spe_100 | 4 | 4 | 0.00000000000396011 |
| Solanum tuberosum | ST4.03ch12 | 6 | CH_stu_184 | 4 | 5 | 0.0000000000302795 |
| Vigna mungo | CM024075.1 | 6 | CH_vmu_477 | 2 | 2 | 0.000193842 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |