Functional clusters
Information
- Type InterPro
- Description Allene oxide cyclase/Dirigent protein
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_223 | 5 | 41 | 0.0000976828 |
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_239 | 4 | 15 | 0.000138145 |
| Amborella trichopoda | AmTr_v1.0_scaffold00034 | 5 | CH_atr_530 | 3 | 4 | 0.000319096 |
| Amborella trichopoda | AmTr_v1.0_scaffold00134 | 5 | CH_atr_91 | 6 | 9 | 0.0000000000164587 |
| Corylus avellana | 4 | 5 | CH_cav_107 | 6 | 9 | 0.00000000000553229 |
| Corylus avellana | 10 | 5 | CH_cav_119 | 6 | 11 | 0.0000000000303713 |
| Corylus avellana | 11 | 5 | CH_cav_587 | 3 | 4 | 0.000192263 |
| Carica papaya | supercontig_85 | 5 | CH_cpa_18 | 6 | 6 | 0.00000000000000139972 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_1102 | 3 | 3 | 0.0000680522 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_94 | 10 | 10 | 1.4186e-25 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_155 | 5 | 5 | 0.0000000000677035 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_156 | 5 | 5 | 0.0000000000677035 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_533 | 3 | 3 | 0.0000554934 |
| Magnolia biondii | Chr09 | 5 | CH_mbi_1099 | 3 | 8 | 0.000454738 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_150 | 6 | 14 | 0.00000000000322306 |
| Nelumbo nucifera | chr2 | 5 | CH_nnu_300 | 3 | 3 | 0.00000616374 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_69 | 5 | 5 | 0.00000000000135877 |
| Olea europaea | scaffold927 | 5 | CH_oeu_244 | 3 | 3 | 0.00000865072 |
| Olea europaea | chr8 | 5 | CH_oeu_286 | 3 | 4 | 0.0000345874 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_680 | 3 | 5 | 0.000412733 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_80 | 6 | 6 | 0.000000000000035491 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_182 | 7 | 15 | 0.000000000042013 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_198 | 10 | 25 | 1.67745e-20 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_660 | 5 | 6 | 0.00000000012714 |
| Solanum lycopersicum | SL4.0ch08 | 5 | CH_sly_512 | 3 | 3 | 0.0000188826 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_641 | 3 | 4 | 0.0000754848 |
| Trochodendron aralioides | group14 | 5 | CH_tar_110 | 7 | 26 | 0.0000000000444796 |
| Trochodendron aralioides | group0 | 5 | CH_tar_295 | 4 | 5 | 0.000000296407 |
| Trochodendron aralioides | group2 | 5 | CH_tar_392 | 4 | 8 | 0.00000413858 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_402 | 5 | CH_tpr_243 | 4 | 5 | 0.000000479804 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_32 | 7 | 7 | 1.8709e-16 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_321 | 4 | 7 | 0.00000335146 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_460 | 3 | 3 | 0.0000725113 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_643 | 3 | 4 | 0.000289746 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_219 | 3 | 3 | 0.00000180168 |
| Vitis vinifera | chr6 | 5 | CH_vvi_259 | 4 | 6 | 0.0000000470958 |
| Vitis vinifera | chr12 | 5 | CH_vvi_410 | 3 | 3 | 0.00000590151 |
| Zea mays | 2 | 5 | CH_zma_420 | 3 | 5 | 0.000279642 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_223 | 5 | 41 | 0.0000976828 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_239 | 4 | 15 | 0.000138145 |
| Amborella trichopoda | AmTr_v1.0_scaffold00034 | 6 | CH_atr_530 | 3 | 4 | 0.000319096 |
| Amborella trichopoda | AmTr_v1.0_scaffold00134 | 6 | CH_atr_91 | 6 | 9 | 0.0000000000164587 |
| Corylus avellana | 4 | 6 | CH_cav_107 | 6 | 9 | 0.00000000000553229 |
| Corylus avellana | 10 | 6 | CH_cav_119 | 6 | 11 | 0.0000000000303713 |
| Corylus avellana | 11 | 6 | CH_cav_587 | 3 | 4 | 0.000192263 |
| Carica papaya | supercontig_85 | 6 | CH_cpa_18 | 6 | 6 | 0.00000000000000139972 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_1102 | 3 | 3 | 0.0000680522 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_94 | 10 | 10 | 1.4186e-25 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_155 | 5 | 5 | 0.0000000000677035 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_156 | 5 | 5 | 0.0000000000677035 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_533 | 3 | 3 | 0.0000554934 |
| Magnolia biondii | Chr09 | 6 | CH_mbi_1099 | 3 | 8 | 0.000454738 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_150 | 6 | 14 | 0.00000000000322306 |
| Nelumbo nucifera | chr2 | 6 | CH_nnu_300 | 3 | 3 | 0.00000616374 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_69 | 5 | 5 | 0.00000000000135877 |
| Olea europaea | scaffold927 | 6 | CH_oeu_244 | 3 | 3 | 0.00000865072 |
| Olea europaea | chr8 | 6 | CH_oeu_286 | 3 | 4 | 0.0000345874 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_680 | 3 | 5 | 0.000412733 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_80 | 6 | 6 | 0.000000000000035491 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_182 | 7 | 15 | 0.000000000042013 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_198 | 10 | 25 | 1.67745e-20 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_660 | 5 | 6 | 0.00000000012714 |
| Solanum lycopersicum | SL4.0ch08 | 6 | CH_sly_512 | 3 | 3 | 0.0000188826 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_641 | 3 | 4 | 0.0000754848 |
| Trochodendron aralioides | group14 | 6 | CH_tar_110 | 7 | 26 | 0.0000000000444796 |
| Trochodendron aralioides | group0 | 6 | CH_tar_295 | 4 | 5 | 0.000000296407 |
| Trochodendron aralioides | group2 | 6 | CH_tar_392 | 4 | 8 | 0.00000413858 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_402 | 6 | CH_tpr_243 | 4 | 5 | 0.000000479804 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_32 | 7 | 7 | 1.8709e-16 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_321 | 4 | 7 | 0.00000335146 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_460 | 3 | 3 | 0.0000725113 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_643 | 3 | 4 | 0.000289746 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_219 | 3 | 3 | 0.00000180168 |
| Vitis vinifera | chr6 | 6 | CH_vvi_259 | 4 | 6 | 0.0000000470958 |
| Vitis vinifera | chr12 | 6 | CH_vvi_410 | 3 | 3 | 0.00000590151 |
| Zea mays | 2 | 6 | CH_zma_420 | 3 | 5 | 0.000279642 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |