Functional clusters
Information
- Type InterPro
- Description Ion channel CASTOR/POLLUX/SYM8-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_99 | 6 | 8 | 6.39133e-16 |
| Capsicum annuum | PGAv.1.6.scaffold694 | 5 | CH_can_279 | 3 | 3 | 0.0000000409487 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_308 | 3 | 31 | 0.0000469304 |
| Durio zibethinus | NW_019168270.1 | 5 | CH_dzi_549 | 2 | 2 | 0.000463489 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_498 | 5 | 79 | 0.000000541765 |
| Malus domestica | Chr11 | 5 | CH_mdo_1332 | 2 | 2 | 0.000568817 |
| Marchantia polymorpha | scaffold_173 | 5 | CH_mpo_196 | 2 | 2 | 0.000331327 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_171 | 3 | 4 | 0.0000000348038 |
| Petunia axillaris | Peaxi162Scf00002 | 5 | CH_pax_570 | 2 | 2 | 0.000211067 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_573 | 2 | 2 | 0.000450214 |
| Quercus lobata | CM012294 | 5 | CH_qlo_937 | 3 | 4 | 0.000000895536 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_282 | 4 | 4 | 0.00000000000665272 |
| Salix brachista | GWHAAZH00000019 | 5 | CH_sbr_140 | 5 | 11 | 0.0000000000702233 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_667 | 4 | 7 | 0.000000000182063 |
| Schrenkiella parvula | ch6-4 | 5 | CH_spa_300 | 2 | 2 | 0.000236202 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_242 | 3 | 3 | 0.0000000296764 |
| Vigna mungo | CM024072.1 | 5 | CH_vmu_552 | 2 | 2 | 0.000387685 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_99 | 6 | 8 | 6.39133e-16 |
| Capsicum annuum | PGAv.1.6.scaffold694 | 6 | CH_can_279 | 3 | 3 | 0.0000000409487 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_308 | 3 | 31 | 0.0000469304 |
| Durio zibethinus | NW_019168270.1 | 6 | CH_dzi_549 | 2 | 2 | 0.000463489 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_498 | 5 | 79 | 0.000000541765 |
| Malus domestica | Chr11 | 6 | CH_mdo_1332 | 2 | 2 | 0.000568817 |
| Marchantia polymorpha | scaffold_173 | 6 | CH_mpo_196 | 2 | 2 | 0.000331327 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_171 | 3 | 4 | 0.0000000348038 |
| Petunia axillaris | Peaxi162Scf00002 | 6 | CH_pax_570 | 2 | 2 | 0.000211067 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_573 | 2 | 2 | 0.000450214 |
| Quercus lobata | CM012294 | 6 | CH_qlo_937 | 3 | 4 | 0.000000895536 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_282 | 4 | 4 | 0.00000000000665272 |
| Salix brachista | GWHAAZH00000019 | 6 | CH_sbr_140 | 5 | 11 | 0.0000000000702233 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_667 | 4 | 7 | 0.000000000182063 |
| Schrenkiella parvula | ch6-4 | 6 | CH_spa_300 | 2 | 2 | 0.000236202 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_242 | 3 | 3 | 0.0000000296764 |
| Vigna mungo | CM024072.1 | 6 | CH_vmu_552 | 2 | 2 | 0.000387685 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |