Functional clusters
Information
- Type InterPro
- Description Nucleoporin Nup188
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_88 | 5 | 5 | 3.31633e-17 |
| Corylus avellana | 1 | 5 | CH_cav_549 | 2 | 2 | 0.0000766695 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_697 | 2 | 4 | 0.000492146 |
| Citrullus lanatus | CG_Chr02 | 5 | CH_cla_36 | 4 | 6 | 0.0000000000314175 |
| Carica papaya | supercontig_37 | 5 | CH_cpa_414 | 2 | 2 | 0.0000950661 |
| Durio zibethinus | NW_019168048.1 | 5 | CH_dzi_142 | 3 | 3 | 0.0000000032224 |
| Gossypium hirsutum | A12 | 5 | CH_ghi_887 | 2 | 2 | 0.0000801047 |
| Glycine max | Gm11 | 5 | CH_gma_664 | 2 | 2 | 0.000113867 |
| Lotus japonicus | chr3 | 5 | CH_lja_418 | 2 | 2 | 0.0000715077 |
| Malus domestica | Chr10 | 5 | CH_mdo_185 | 4 | 6 | 0.0000000000122694 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_508 | 2 | 2 | 0.0000528123 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_447 | 4 | 4 | 0.000000000000346852 |
| Sapria himalayana | scaffold8_16897533 | 5 | CH_shi_65 | 4 | 11 | 0.000000000185067 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_631 | 2 | 2 | 0.0000586941 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_507 | 2 | 2 | 0.0000929238 |
| Vanilla planifolia | CM028151.1 | 5 | CH_vpl_182 | 3 | 9 | 0.000000687762 |
| Zea mays | 1 | 5 | CH_zma_341 | 2 | 2 | 0.0000511313 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_88 | 5 | 5 | 3.31633e-17 |
| Corylus avellana | 1 | 6 | CH_cav_549 | 2 | 2 | 0.0000766695 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_697 | 2 | 4 | 0.000492146 |
| Citrullus lanatus | CG_Chr02 | 6 | CH_cla_36 | 4 | 6 | 0.0000000000314175 |
| Carica papaya | supercontig_37 | 6 | CH_cpa_414 | 2 | 2 | 0.0000950661 |
| Durio zibethinus | NW_019168048.1 | 6 | CH_dzi_142 | 3 | 3 | 0.0000000032224 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_908 | 2 | 2 | 0.000185036 |
| Gossypium hirsutum | A12 | 6 | CH_ghi_887 | 2 | 2 | 0.0000801047 |
| Glycine max | Gm11 | 6 | CH_gma_664 | 2 | 2 | 0.000113867 |
| Lotus japonicus | chr3 | 6 | CH_lja_418 | 2 | 2 | 0.0000715077 |
| Malus domestica | Chr10 | 6 | CH_mdo_185 | 4 | 6 | 0.0000000000122694 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_508 | 2 | 2 | 0.0000528123 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_447 | 4 | 4 | 0.000000000000346852 |
| Sapria himalayana | scaffold8_16897533 | 6 | CH_shi_65 | 4 | 11 | 0.000000000185067 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_631 | 2 | 2 | 0.0000586941 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_507 | 2 | 2 | 0.0000929238 |
| Vanilla planifolia | CM028151.1 | 6 | CH_vpl_182 | 3 | 9 | 0.000000687762 |
| Zea mays | 1 | 6 | CH_zma_341 | 2 | 2 | 0.0000511313 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |