Functional clusters
Information
- Type InterPro
- Description Myb/SANT-like DNA-binding domain 4
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 5 | CH_acertr_510 | 3 | 3 | 0.000048793 |
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_393 | 3 | 3 | 0.0000293752 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_638 | 3 | 6 | 0.000586226 |
| Avicennia marina | ScioBoG_4088_HRSCAF_4107 | 5 | CH_ama_148 | 3 | 3 | 0.000232236 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_494 | 3 | 9 | 0.00025156 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_620 | 3 | 12 | 0.00074055 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1395 | 3 | 3 | 0.000104252 |
| Brassica carinata | ChrB01 | 5 | CH_bca_1396 | 3 | 3 | 0.000104252 |
| Brassica napus | C06 | 5 | CH_bna_1054 | 3 | 3 | 0.0000941127 |
| Brassica napus | A07 | 5 | CH_bna_1537 | 3 | 5 | 0.000939787 |
| Brassica oleracea | C6 | 5 | CH_bol_539 | 3 | 3 | 0.0000444241 |
| Brassica oleracea | C2 | 5 | CH_bol_758 | 3 | 4 | 0.00044365 |
| Brassica rapa | A07 | 5 | CH_bra_349 | 3 | 3 | 0.000050937 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_875 | 4 | 12 | 0.0000276772 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_972 | 3 | 3 | 0.0000545526 |
| Cannabis sativa | NC_044370.1 | 5 | CH_cansat_412 | 3 | 4 | 0.0000756271 |
| Cicer arietinum L. | Ca_LG4_v3 | 5 | CH_car_185 | 3 | 3 | 0.0000543745 |
| Corylus avellana | 7 | 5 | CH_cav_447 | 3 | 3 | 0.0000396353 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_484 | 3 | 3 | 0.0000453728 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_427 | 3 | 4 | 0.0000791037 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_438 | 3 | 3 | 0.0000290968 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_671 | 3 | 5 | 0.000290541 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_604 | 3 | 3 | 0.000071121 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_718 | 3 | 4 | 0.000284211 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_569 | 3 | 5 | 0.00032507 |
| Durio zibethinus | NW_019167949.1 | 5 | CH_dzi_416 | 3 | 3 | 0.000110271 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_675 | 3 | 5 | 0.00025786 |
| Glycine max | Gm10 | 5 | CH_gma_675 | 3 | 3 | 0.000140084 |
| Glycine max | Gm16 | 5 | CH_gma_676 | 3 | 3 | 0.000140084 |
| Glycine max | Gm20 | 5 | CH_gma_852 | 3 | 4 | 0.00055976 |
| Lupinus albus | Lalb_Chr19 | 5 | CH_lal_733 | 3 | 4 | 0.000536665 |
| Lotus japonicus | chr5 | 5 | CH_lja_379 | 3 | 3 | 0.0000418492 |
| Malus domestica | Chr10 | 5 | CH_mdo_1335 | 3 | 5 | 0.000597014 |
| Malus domestica | Chr05 | 5 | CH_mdo_867 | 3 | 3 | 0.0000597938 |
| Manihot esculenta | Chromosome18 | 5 | CH_mes_444 | 4 | 9 | 0.0000181341 |
| Manihot esculenta | Chromosome02 | 5 | CH_mes_646 | 3 | 4 | 0.000411752 |
| Medicago truncatula | chr1 | 5 | CH_mtr_994 | 3 | 4 | 0.0000662584 |
| Prunus persica | Pp08 | 5 | CH_ppe_653 | 3 | 4 | 0.00018201 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_490 | 4 | 6 | 0.000000162594 |
| Populus trichocarpa | Chr05 | 5 | CH_ptr_587 | 3 | 3 | 0.000146634 |
| Populus trichocarpa | Chr02 | 5 | CH_ptr_763 | 3 | 4 | 0.000585834 |
| Phaseolus vulgaris | Chr07 | 5 | CH_pvu_478 | 3 | 3 | 0.0000740044 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1147 | 3 | 3 | 0.0000218154 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1292 | 3 | 7 | 0.00037439 |
| Salix brachista | GWHAAZH00000002 | 5 | CH_sbr_499 | 3 | 3 | 0.000116744 |
| Salix brachista | GWHAAZH00000005 | 5 | CH_sbr_500 | 3 | 3 | 0.000116744 |
| Sechium edule | LG10 | 5 | CH_sed_523 | 3 | 5 | 0.000874582 |
| Tarenaya hassleriana | NW_010965373.1 | 5 | CH_tha_190 | 3 | 3 | 0.0000617361 |
| Tarenaya hassleriana | NW_010965372.1 | 5 | CH_tha_191 | 3 | 3 | 0.0000617361 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_429 | 3 | 3 | 0.0000281587 |
| Tripterygium wilfordii | NC_052246.1 | 5 | CH_twi_371 | 3 | 3 | 0.000103038 |
| Vigna mungo | CM024077.1 | 5 | CH_vmu_483 | 3 | 4 | 0.000228731 |
| Vigna mungo | CM024071.1 | 5 | CH_vmu_484 | 3 | 4 | 0.000228731 |
| Acer truncatum | chr13 | 6 | CH_acertr_510 | 3 | 3 | 0.000048793 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_393 | 3 | 3 | 0.0000293752 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_638 | 3 | 6 | 0.000586226 |
| Avicennia marina | ScioBoG_4088_HRSCAF_4107 | 6 | CH_ama_148 | 3 | 3 | 0.000232236 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_494 | 3 | 9 | 0.00025156 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_620 | 3 | 12 | 0.00074055 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1395 | 3 | 3 | 0.000104252 |
| Brassica carinata | ChrB01 | 6 | CH_bca_1396 | 3 | 3 | 0.000104252 |
| Brassica napus | C06 | 6 | CH_bna_1054 | 3 | 3 | 0.0000941127 |
| Brassica napus | A07 | 6 | CH_bna_1537 | 3 | 5 | 0.000939787 |
| Brassica oleracea | C6 | 6 | CH_bol_539 | 3 | 3 | 0.0000444241 |
| Brassica oleracea | C2 | 6 | CH_bol_758 | 3 | 4 | 0.00044365 |
| Brassica rapa | A07 | 6 | CH_bra_349 | 3 | 3 | 0.000050937 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_875 | 4 | 12 | 0.0000276772 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_972 | 3 | 3 | 0.0000545526 |
| Cannabis sativa | NC_044370.1 | 6 | CH_cansat_412 | 3 | 4 | 0.0000756271 |
| Cicer arietinum L. | Ca_LG4_v3 | 6 | CH_car_185 | 3 | 3 | 0.0000543745 |
| Corylus avellana | 7 | 6 | CH_cav_447 | 3 | 3 | 0.0000396353 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_484 | 3 | 3 | 0.0000453728 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_427 | 3 | 4 | 0.0000791037 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_438 | 3 | 3 | 0.0000290968 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_671 | 3 | 5 | 0.000290541 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_604 | 3 | 3 | 0.000071121 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_718 | 3 | 4 | 0.000284211 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_569 | 3 | 5 | 0.00032507 |
| Durio zibethinus | NW_019167949.1 | 6 | CH_dzi_416 | 3 | 3 | 0.000110271 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_1133 | 3 | 4 | 0.000606011 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_675 | 3 | 5 | 0.00025786 |
| Glycine max | Gm10 | 6 | CH_gma_675 | 3 | 3 | 0.000140084 |
| Glycine max | Gm16 | 6 | CH_gma_676 | 3 | 3 | 0.000140084 |
| Glycine max | Gm20 | 6 | CH_gma_852 | 3 | 4 | 0.00055976 |
| Lupinus albus | Lalb_Chr19 | 6 | CH_lal_733 | 3 | 4 | 0.000536665 |
| Lotus japonicus | chr5 | 6 | CH_lja_379 | 3 | 3 | 0.0000418492 |
| Malus domestica | Chr10 | 6 | CH_mdo_1335 | 3 | 5 | 0.000597014 |
| Malus domestica | Chr05 | 6 | CH_mdo_867 | 3 | 3 | 0.0000597938 |
| Manihot esculenta | Chromosome18 | 6 | CH_mes_444 | 4 | 9 | 0.0000181341 |
| Manihot esculenta | Chromosome02 | 6 | CH_mes_646 | 3 | 4 | 0.000411752 |
| Medicago truncatula | chr1 | 6 | CH_mtr_994 | 3 | 4 | 0.0000662584 |
| Prunus persica | Pp08 | 6 | CH_ppe_653 | 3 | 4 | 0.00018201 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_490 | 4 | 6 | 0.000000162594 |
| Populus trichocarpa | Chr05 | 6 | CH_ptr_587 | 3 | 3 | 0.000146634 |
| Populus trichocarpa | Chr02 | 6 | CH_ptr_763 | 3 | 4 | 0.000585834 |
| Phaseolus vulgaris | Chr07 | 6 | CH_pvu_478 | 3 | 3 | 0.0000740044 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1147 | 3 | 3 | 0.0000218154 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1292 | 3 | 7 | 0.00037439 |
| Salix brachista | GWHAAZH00000002 | 6 | CH_sbr_499 | 3 | 3 | 0.000116744 |
| Salix brachista | GWHAAZH00000005 | 6 | CH_sbr_500 | 3 | 3 | 0.000116744 |
| Sechium edule | LG10 | 6 | CH_sed_523 | 3 | 5 | 0.000874582 |
| Tarenaya hassleriana | NW_010965373.1 | 6 | CH_tha_190 | 3 | 3 | 0.0000617361 |
| Tarenaya hassleriana | NW_010965372.1 | 6 | CH_tha_191 | 3 | 3 | 0.0000617361 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_429 | 3 | 3 | 0.0000281587 |
| Tripterygium wilfordii | NC_052246.1 | 6 | CH_twi_371 | 3 | 3 | 0.000103038 |
| Vigna mungo | CM024077.1 | 6 | CH_vmu_483 | 3 | 4 | 0.000228731 |
| Vigna mungo | CM024071.1 | 6 | CH_vmu_484 | 3 | 4 | 0.000228731 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |