Functional clusters
Information
- Type InterPro
- Description Putative nucleotide-diphospho-sugar transferase At1g28695/At4g15970-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_300 | 3 | 14 | 0.0000350807 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 5 | CH_arhy_336 | 4 | 4 | 0.000000000246346 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_434 | 4 | 8 | 0.0000000172316 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_262 | 3 | 4 | 0.000000590914 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 5 | CH_atr_669 | 2 | 2 | 0.000794407 |
| Coffea canephora | chr0 | 5 | CH_ccan_286 | 3 | 37 | 0.0000119258 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_565 | 3 | 11 | 0.000141656 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3670 | 5 | CH_cqu_368 | 3 | 3 | 0.000000282885 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_374 | 3 | 5 | 0.0000132247 |
| Daucus carota | DCARv2_Chr6 | 5 | CH_dca_634 | 2 | 2 | 0.000382665 |
| Erythranthe guttata | scaffold_1 | 5 | CH_egut_178 | 4 | 5 | 0.000000000405347 |
| Eutrema salsugineum | scaffold_20 | 5 | CH_esa_107 | 5 | 9 | 0.000000000271834 |
| Glycine max | Gm16 | 5 | CH_gma_95 | 5 | 5 | 0.0000000000000963317 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_640 | 2 | 2 | 0.000536107 |
| Helianthus annuus | HanXRQChr07 | 5 | CH_han_106 | 8 | 48 | 6.64433e-16 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_280 | 4 | 4 | 0.000000000529756 |
| Hydrangea macrophylla | Hma1.2p1_0264F.1 | 5 | CH_hma_477 | 2 | 2 | 0.000111086 |
| Lotus japonicus | chr2 | 5 | CH_lja_290 | 3 | 4 | 0.00000257672 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_880 | 2 | 2 | 0.00077101 |
| Malus domestica | Chr06 | 5 | CH_mdo_240 | 4 | 4 | 0.000000000163766 |
| Malus domestica | Chr14 | 5 | CH_mdo_566 | 3 | 3 | 0.000000785171 |
| Medicago truncatula | chr8 | 5 | CH_mtr_591 | 3 | 3 | 0.000000212703 |
| Nelumbo nucifera | chr4 | 5 | CH_nnu_108 | 4 | 5 | 0.00000000035202 |
| Nicotiana tabacum | Nitab4.5_0000103 | 5 | CH_nta_137 | 3 | 4 | 0.00000404464 |
| Nicotiana tabacum | Nitab4.5_0001130 | 5 | CH_nta_235 | 3 | 11 | 0.000166537 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_54 | 6 | 6 | 4.6278e-17 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_88 | 5 | 7 | 0.000000000001258 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_295 | 3 | 3 | 0.000000680203 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_296 | 3 | 3 | 0.000000680203 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_324 | 4 | 8 | 0.00000000710642 |
| Striga asiatica | scaffold27 | 5 | CH_sas_159 | 3 | 13 | 0.000140695 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_1038 | 4 | 6 | 0.0000000657582 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_516 | 5 | 5 | 0.0000000000022445 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_623 | 5 | 7 | 0.000000000047094 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_846 | 4 | 4 | 0.00000000438768 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_909 | 2 | 2 | 0.000586941 |
| Schrenkiella parvula | ch1-1 | 5 | CH_spa_166 | 3 | 3 | 0.00000338481 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_811 | 2 | 2 | 0.00044479 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_937 | 2 | 2 | 0.000768679 |
| Selenicereus undatus | Scaffold_33678 | 5 | CH_sun_296 | 2 | 2 | 0.000217992 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_699 | 2 | 2 | 0.000439432 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_15 | 7 | 7 | 6.08832e-21 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_221 | 3 | 4 | 0.00000140262 |
| Vitis vinifera | chr15 | 5 | CH_vvi_790 | 2 | 2 | 0.00076063 |
| Zea mays | 8 | 5 | CH_zma_33 | 6 | 6 | 3.04867e-16 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_300 | 3 | 14 | 0.0000350807 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 6 | CH_arhy_336 | 4 | 4 | 0.000000000246346 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_434 | 4 | 8 | 0.0000000172316 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_262 | 3 | 4 | 0.000000590914 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 6 | CH_atr_669 | 2 | 2 | 0.000794407 |
| Coffea canephora | chr0 | 6 | CH_ccan_286 | 3 | 37 | 0.0000119258 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_565 | 3 | 11 | 0.000141656 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3670 | 6 | CH_cqu_368 | 3 | 3 | 0.000000282885 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_374 | 3 | 5 | 0.0000132247 |
| Daucus carota | DCARv2_Chr6 | 6 | CH_dca_634 | 2 | 2 | 0.000382665 |
| Erythranthe guttata | scaffold_1 | 6 | CH_egut_178 | 4 | 5 | 0.000000000405347 |
| Eutrema salsugineum | scaffold_20 | 6 | CH_esa_107 | 5 | 9 | 0.000000000271834 |
| Glycine max | Gm16 | 6 | CH_gma_95 | 5 | 5 | 0.0000000000000963317 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_640 | 2 | 2 | 0.000536107 |
| Helianthus annuus | HanXRQChr07 | 6 | CH_han_106 | 8 | 48 | 6.64433e-16 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_280 | 4 | 4 | 0.000000000529756 |
| Hydrangea macrophylla | Hma1.2p1_0264F.1 | 6 | CH_hma_477 | 2 | 2 | 0.000111086 |
| Lotus japonicus | chr2 | 6 | CH_lja_290 | 3 | 4 | 0.00000257672 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_880 | 2 | 2 | 0.00077101 |
| Malus domestica | Chr06 | 6 | CH_mdo_240 | 4 | 4 | 0.000000000163766 |
| Malus domestica | Chr14 | 6 | CH_mdo_566 | 3 | 3 | 0.000000785171 |
| Medicago truncatula | chr8 | 6 | CH_mtr_591 | 3 | 3 | 0.000000212703 |
| Nelumbo nucifera | chr4 | 6 | CH_nnu_108 | 4 | 5 | 0.00000000035202 |
| Nicotiana tabacum | Nitab4.5_0000103 | 6 | CH_nta_137 | 3 | 4 | 0.00000404464 |
| Nicotiana tabacum | Nitab4.5_0001130 | 6 | CH_nta_235 | 3 | 11 | 0.000166537 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_54 | 6 | 6 | 4.6278e-17 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_88 | 5 | 7 | 0.000000000001258 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_295 | 3 | 3 | 0.000000680203 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_296 | 3 | 3 | 0.000000680203 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_324 | 4 | 8 | 0.00000000710642 |
| Striga asiatica | scaffold27 | 6 | CH_sas_159 | 3 | 13 | 0.000140695 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_1038 | 4 | 6 | 0.0000000657582 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_516 | 5 | 5 | 0.0000000000022445 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_623 | 5 | 7 | 0.000000000047094 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_846 | 4 | 4 | 0.00000000438768 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_909 | 2 | 2 | 0.000586941 |
| Schrenkiella parvula | ch1-1 | 6 | CH_spa_166 | 3 | 3 | 0.00000338481 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_811 | 2 | 2 | 0.00044479 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_937 | 2 | 2 | 0.000768679 |
| Selenicereus undatus | Scaffold_33678 | 6 | CH_sun_296 | 2 | 2 | 0.000217992 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_699 | 2 | 2 | 0.000439432 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_15 | 7 | 7 | 6.08832e-21 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_221 | 3 | 4 | 0.00000140262 |
| Vitis vinifera | chr15 | 6 | CH_vvi_790 | 2 | 2 | 0.00076063 |
| Zea mays | 8 | 6 | CH_zma_33 | 6 | 6 | 3.04867e-16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |