Functional clusters
Information
- Type InterPro
- Description Terpene cyclases, class 1, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_994 | 3 | 4 | 0.000148984 |
| Amborella trichopoda | AmTr_v1.0_scaffold00032 | 5 | CH_atr_319 | 4 | 29 | 0.0000117125 |
| Brassica carinata | ChrB03 | 5 | CH_bca_1056 | 3 | 3 | 0.0000104049 |
| Brassica napus | A06 | 5 | CH_bna_963 | 3 | 4 | 0.0000456698 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_891 | 4 | 21 | 0.0000351699 |
| Cannabis sativa | NC_044377.1 | 5 | CH_cansat_351 | 3 | 3 | 0.0000290732 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_46 | 8 | 12 | 3.47505e-18 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_242 | 4 | 5 | 0.0000000626295 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_213 | 6 | 9 | 0.000000000142182 |
| Citrullus lanatus | CG_Chr10 | 5 | CH_cla_98 | 4 | 7 | 0.0000000747046 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1337 | 5 | CH_cqu_227 | 5 | 12 | 0.00000000196367 |
| Davidia involucrata | GWHABJS00000002 | 5 | CH_din_174 | 4 | 5 | 0.00000000332337 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_450 | 3 | 3 | 0.0000290612 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_744 | 4 | 26 | 0.00047218 |
| Gossypium hirsutum | D05 | 5 | CH_ghi_141 | 8 | 13 | 3.6344e-16 |
| Gossypium hirsutum | D05 | 5 | CH_ghi_488 | 4 | 4 | 0.000000159588 |
| Gossypium hirsutum | A04 | 5 | CH_ghi_87 | 10 | 14 | 3.51712e-22 |
| Gossypium hirsutum | A04 | 5 | CH_ghi_920 | 3 | 3 | 0.000134305 |
| Gossypium raimondii | Chr02 | 5 | CH_gra_456 | 3 | 3 | 0.000100996 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_58 | 8 | 9 | 3.19647e-18 |
| Manihot esculenta | Chromosome12 | 5 | CH_mes_181 | 5 | 5 | 0.0000000000781572 |
| Manihot esculenta | Chromosome02 | 5 | CH_mes_277 | 4 | 4 | 0.0000000691797 |
| Medicago truncatula | chr2 | 5 | CH_mtr_506 | 4 | 6 | 0.0000000394552 |
| Olea europaea | chr21 | 5 | CH_oeu_366 | 3 | 4 | 0.0000559779 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_361 | 3 | 3 | 0.00000405411 |
| Petunia axillaris | Peaxi162Scf00409 | 5 | CH_pax_488 | 3 | 4 | 0.0000972314 |
| Punica granatum | NC_045129.1 | 5 | CH_pgr_440 | 3 | 4 | 0.0000877766 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_307 | 3 | 3 | 0.00000228572 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_501 | 3 | 5 | 0.000186007 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_196 | 8 | 68 | 0.000000000159297 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_603 | 3 | 4 | 0.000164381 |
| Salix brachista | GWHAAZH00000019 | 5 | CH_sbr_510 | 4 | 34 | 0.000166492 |
| Sechium edule | LG06 | 5 | CH_sed_262 | 3 | 3 | 0.0000117576 |
| Sechium edule | LG01 | 5 | CH_sed_41 | 9 | 52 | 0.00000000000000170887 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_725 | 6 | 15 | 0.000000000887481 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_440 | 3 | 3 | 0.00000682558 |
| Vitis vinifera | chr19 | 5 | CH_vvi_476 | 3 | 3 | 0.0000519333 |
| Zea mays | 2 | 5 | CH_zma_260 | 3 | 3 | 0.00000603944 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_994 | 3 | 4 | 0.000148984 |
| Amborella trichopoda | AmTr_v1.0_scaffold00032 | 6 | CH_atr_319 | 4 | 29 | 0.0000117125 |
| Brassica carinata | ChrB03 | 6 | CH_bca_1056 | 3 | 3 | 0.0000104049 |
| Brassica napus | A06 | 6 | CH_bna_963 | 3 | 4 | 0.0000456698 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_891 | 4 | 21 | 0.0000351699 |
| Cannabis sativa | NC_044377.1 | 6 | CH_cansat_351 | 3 | 3 | 0.0000290732 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_46 | 8 | 12 | 3.47505e-18 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_242 | 4 | 5 | 0.0000000626295 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_213 | 6 | 9 | 0.000000000142182 |
| Citrullus lanatus | CG_Chr10 | 6 | CH_cla_98 | 4 | 7 | 0.0000000747046 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1337 | 6 | CH_cqu_227 | 5 | 12 | 0.00000000196367 |
| Davidia involucrata | GWHABJS00000002 | 6 | CH_din_174 | 4 | 5 | 0.00000000332337 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_450 | 3 | 3 | 0.0000290612 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_744 | 4 | 26 | 0.00047218 |
| Gossypium hirsutum | D05 | 6 | CH_ghi_141 | 8 | 13 | 3.6344e-16 |
| Gossypium hirsutum | D05 | 6 | CH_ghi_488 | 4 | 4 | 0.000000159588 |
| Gossypium hirsutum | A04 | 6 | CH_ghi_87 | 10 | 14 | 3.51712e-22 |
| Gossypium hirsutum | A04 | 6 | CH_ghi_920 | 3 | 3 | 0.000134305 |
| Gossypium raimondii | Chr02 | 6 | CH_gra_456 | 3 | 3 | 0.000100996 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_58 | 8 | 9 | 3.19647e-18 |
| Manihot esculenta | Chromosome12 | 6 | CH_mes_181 | 5 | 5 | 0.0000000000781572 |
| Manihot esculenta | Chromosome02 | 6 | CH_mes_277 | 4 | 4 | 0.0000000691797 |
| Medicago truncatula | chr2 | 6 | CH_mtr_506 | 4 | 6 | 0.0000000394552 |
| Olea europaea | chr21 | 6 | CH_oeu_366 | 3 | 4 | 0.0000559779 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_361 | 3 | 3 | 0.00000405411 |
| Petunia axillaris | Peaxi162Scf00409 | 6 | CH_pax_488 | 3 | 4 | 0.0000972314 |
| Punica granatum | NC_045129.1 | 6 | CH_pgr_440 | 3 | 4 | 0.0000877766 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_307 | 3 | 3 | 0.00000228572 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_501 | 3 | 5 | 0.000186007 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_196 | 8 | 68 | 0.000000000159297 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_603 | 3 | 4 | 0.000164381 |
| Salix brachista | GWHAAZH00000019 | 6 | CH_sbr_510 | 4 | 34 | 0.000166492 |
| Sechium edule | LG06 | 6 | CH_sed_262 | 3 | 3 | 0.0000117576 |
| Sechium edule | LG01 | 6 | CH_sed_41 | 9 | 52 | 0.00000000000000170887 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_725 | 6 | 15 | 0.000000000887481 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_440 | 3 | 3 | 0.00000682558 |
| Vitis vinifera | chr19 | 6 | CH_vvi_476 | 3 | 3 | 0.0000519333 |
| Zea mays | 2 | 6 | CH_zma_260 | 3 | 3 | 0.00000603944 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |