Functional clusters
Information
- Type InterPro
- Description DNA glycosylase, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | csc-22 | 5 | CH_aar_209 | 3 | 3 | 0.00000454477 |
| Aethionema arabicum | LG-9 | 5 | CH_aar_261 | 3 | 6 | 0.0000907804 |
| Actinidia chinensis | Lachesis_group20 | 5 | CH_ach_135 | 3 | 3 | 0.000000371811 |
| Capsicum annuum | PGAv.1.6.scaffold824 | 5 | CH_can_866 | 2 | 2 | 0.000826105 |
| Carica papaya | supercontig_5 | 5 | CH_cpa_525 | 2 | 2 | 0.000285198 |
| Lupinus albus | Lalb_Chr19 | 5 | CH_lal_227 | 3 | 3 | 0.000000347064 |
| Lupinus albus | Lalb_Chr02 | 5 | CH_lal_93 | 4 | 4 | 0.0000000000546471 |
| Medicago truncatula | chr2 | 5 | CH_mtr_657 | 3 | 3 | 0.000000724204 |
| Oryza sativa ssp. japonica | chr05 | 5 | CH_osa_308 | 3 | 5 | 0.000000836619 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_695 | 3 | 7 | 0.000000834201 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_454 | 3 | 6 | 0.00000578534 |
| Trochodendron aralioides | group12 | 5 | CH_tar_262 | 3 | 3 | 0.000000108135 |
| Vanilla planifolia | CM028157.1 | 5 | CH_vpl_147 | 3 | 3 | 0.000000163789 |
| Aethionema arabicum | csc-22 | 6 | CH_aar_209 | 3 | 3 | 0.00000454477 |
| Aethionema arabicum | LG-9 | 6 | CH_aar_261 | 3 | 6 | 0.0000907804 |
| Actinidia chinensis | Lachesis_group20 | 6 | CH_ach_135 | 3 | 3 | 0.000000371811 |
| Capsicum annuum | PGAv.1.6.scaffold824 | 6 | CH_can_866 | 2 | 2 | 0.000826105 |
| Carica papaya | supercontig_5 | 6 | CH_cpa_525 | 2 | 2 | 0.000285198 |
| Lupinus albus | Lalb_Chr19 | 6 | CH_lal_227 | 3 | 3 | 0.000000347064 |
| Lupinus albus | Lalb_Chr02 | 6 | CH_lal_93 | 4 | 4 | 0.0000000000546471 |
| Medicago truncatula | chr2 | 6 | CH_mtr_657 | 3 | 3 | 0.000000724204 |
| Oryza sativa ssp. japonica | chr05 | 6 | CH_osa_308 | 3 | 5 | 0.000000836619 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_695 | 3 | 7 | 0.000000834201 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_454 | 3 | 6 | 0.00000578534 |
| Trochodendron aralioides | group12 | 6 | CH_tar_262 | 3 | 3 | 0.000000108135 |
| Vanilla planifolia | CM028157.1 | 6 | CH_vpl_147 | 3 | 3 | 0.000000163789 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |