Functional clusters
Information
- Type InterPro
- Description F-box protein AUF1-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_9 | 5 | CH_amhyb_256 | 2 | 2 | 0.0000841751 |
| Brassica carinata | ChrB07 | 5 | CH_bca_944 | 3 | 4 | 0.00000422159 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_166 | 4 | 14 | 0.000000012744 |
| Daucus carota | DCARv2_Chr8 | 5 | CH_dca_767 | 2 | 2 | 0.000956663 |
| Davidia involucrata | GWHABJS00000085 | 5 | CH_din_355 | 3 | 3 | 0.00000363566 |
| Davidia involucrata | GWHABJS00000010 | 5 | CH_din_48 | 8 | 22 | 5.93889e-18 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_171 | 5 | 13 | 0.00000000165854 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_599 | 3 | 6 | 0.000122126 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_1289 | 2 | 2 | 0.000351165 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_103 | 8 | 37 | 3.16327e-16 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_10 | 15 | 34 | 1.02769e-35 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 5 | CH_lsa_58 | 9 | 20 | 1.1564e-19 |
| Physcomitrium patens | Chr21 | 5 | CH_ppa_37 | 4 | 7 | 0.0000000241604 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_91 | 6 | 7 | 3.05145e-16 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_636 | 3 | 3 | 0.0000408835 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_7 | 22 | 29 | 1.25424e-58 |
| Striga asiatica | scaffold223 | 5 | CH_sas_258 | 2 | 2 | 0.000938057 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_749 | 2 | 2 | 0.00068247 |
| Salix brachista | GWHAAZH00000001 | 5 | CH_sbr_109 | 5 | 7 | 0.00000000000319506 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_403 | 3 | 5 | 0.000017026 |
| Tarenaya hassleriana | NW_010967966.1 | 5 | CH_tha_117 | 3 | 3 | 0.000000256136 |
| Vitis vinifera | chr6 | 5 | CH_vvi_713 | 2 | 2 | 0.000456378 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_9 | 6 | CH_amhyb_256 | 2 | 2 | 0.0000841751 |
| Brassica carinata | ChrB07 | 6 | CH_bca_944 | 3 | 4 | 0.00000422159 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_166 | 4 | 14 | 0.000000012744 |
| Daucus carota | DCARv2_Chr8 | 6 | CH_dca_767 | 2 | 2 | 0.000956663 |
| Davidia involucrata | GWHABJS00000085 | 6 | CH_din_355 | 3 | 3 | 0.00000363566 |
| Davidia involucrata | GWHABJS00000010 | 6 | CH_din_48 | 8 | 22 | 5.93889e-18 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_171 | 5 | 13 | 0.00000000165854 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_599 | 3 | 6 | 0.000122126 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_1289 | 2 | 2 | 0.000351165 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_103 | 8 | 37 | 3.16327e-16 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_10 | 15 | 34 | 1.02769e-35 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 6 | CH_lsa_58 | 9 | 20 | 1.1564e-19 |
| Physcomitrium patens | Chr21 | 6 | CH_ppa_37 | 4 | 7 | 0.0000000241604 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_91 | 6 | 7 | 3.05145e-16 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_636 | 3 | 3 | 0.0000408835 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_7 | 22 | 29 | 1.25424e-58 |
| Striga asiatica | scaffold223 | 6 | CH_sas_258 | 2 | 2 | 0.000938057 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_749 | 2 | 2 | 0.00068247 |
| Salix brachista | GWHAAZH00000001 | 6 | CH_sbr_109 | 5 | 7 | 0.00000000000319506 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_403 | 3 | 5 | 0.000017026 |
| Tarenaya hassleriana | NW_010967966.1 | 6 | CH_tha_117 | 3 | 3 | 0.000000256136 |
| Vitis vinifera | chr6 | 6 | CH_vvi_713 | 2 | 2 | 0.000456378 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |