Functional clusters
Information
- Type InterPro
- Description Carbohydrate-binding X8 domain-containing protein, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group12 | 5 | CH_ach_51 | 5 | 8 | 0.000000000294815 |
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_557 | 3 | 5 | 0.000213811 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 5 | CH_arhy_404 | 5 | 13 | 0.00000000508453 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_182 | 5 | 19 | 0.0000000220317 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_201 | 4 | 6 | 0.0000000622858 |
| Brassica carinata | ChrB04 | 5 | CH_bca_30 | 8 | 8 | 6.06656e-21 |
| Brassica napus | C04 | 5 | CH_bna_529 | 4 | 6 | 0.00000045464 |
| Brassica oleracea | C4 | 5 | CH_bol_570 | 3 | 4 | 0.000068302 |
| Brassica rapa | A04 | 5 | CH_bra_316 | 3 | 3 | 0.0000273153 |
| Brassica rapa | A06 | 5 | CH_bra_37 | 6 | 7 | 0.0000000000000881279 |
| Cicer arietinum L. | Ca_LG6_v3 | 5 | CH_car_180 | 3 | 4 | 0.0000414129 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_39 | 5 | 11 | 0.00000000196548 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_141 | 5 | 5 | 0.00000000000291046 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_428 | 3 | 3 | 0.0000234781 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_429 | 3 | 3 | 0.0000234781 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_225 | 4 | 4 | 0.0000000774527 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_299 | 5 | 19 | 0.00000107134 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_431 | 3 | 3 | 0.0000623084 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_111 | 7 | 13 | 0.0000000000000674903 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_381 | 5 | 29 | 0.00000494046 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_462 | 3 | 3 | 0.0000394481 |
| Eutrema salsugineum | scaffold_6 | 5 | CH_esa_145 | 4 | 4 | 0.000000019807 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_469 | 3 | 3 | 0.00000801688 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_464 | 4 | 6 | 0.000000105637 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_394 | 3 | 4 | 0.0000265466 |
| Lupinus albus | Lalb_Chr12 | 5 | CH_lal_56 | 6 | 6 | 0.000000000000040293 |
| Medicago truncatula | chr8 | 5 | CH_mtr_417 | 4 | 5 | 0.0000000040316 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_98 | 5 | 5 | 0.00000000000483919 |
| Populus trichocarpa | Chr11 | 5 | CH_ptr_437 | 4 | 13 | 0.00000438228 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_67 | 9 | 12 | 6.2131e-24 |
| Sapria himalayana | scaffold49_4090992 | 5 | CH_shi_501 | 2 | 2 | 0.000343083 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_187 | 3 | 3 | 0.0000123676 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_456 | 3 | 4 | 0.0000146386 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_373 | 3 | 3 | 0.00000979883 |
| Actinidia chinensis | Lachesis_group12 | 6 | CH_ach_51 | 5 | 8 | 0.000000000294815 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_557 | 3 | 5 | 0.000213811 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 6 | CH_arhy_404 | 5 | 13 | 0.00000000508453 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_182 | 5 | 19 | 0.0000000220317 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_201 | 4 | 6 | 0.0000000622858 |
| Brassica carinata | ChrB04 | 6 | CH_bca_30 | 8 | 8 | 6.06656e-21 |
| Brassica napus | C04 | 6 | CH_bna_529 | 4 | 6 | 0.00000045464 |
| Brassica oleracea | C4 | 6 | CH_bol_570 | 3 | 4 | 0.000068302 |
| Brassica rapa | A04 | 6 | CH_bra_316 | 3 | 3 | 0.0000273153 |
| Brassica rapa | A06 | 6 | CH_bra_37 | 6 | 7 | 0.0000000000000881279 |
| Cicer arietinum L. | Ca_LG6_v3 | 6 | CH_car_180 | 3 | 4 | 0.0000414129 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_39 | 5 | 11 | 0.00000000196548 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_141 | 5 | 5 | 0.00000000000291046 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_428 | 3 | 3 | 0.0000234781 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_429 | 3 | 3 | 0.0000234781 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_225 | 4 | 4 | 0.0000000774527 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_299 | 5 | 19 | 0.00000107134 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_431 | 3 | 3 | 0.0000623084 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_111 | 7 | 13 | 0.0000000000000674903 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_381 | 5 | 29 | 0.00000494046 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_462 | 3 | 3 | 0.0000394481 |
| Eutrema salsugineum | scaffold_6 | 6 | CH_esa_145 | 4 | 4 | 0.000000019807 |
| Fragaria x ananassa | Fvb3-4 | 6 | CH_fan_693 | 3 | 3 | 0.0000224332 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_694 | 3 | 3 | 0.0000224332 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_469 | 3 | 3 | 0.00000801688 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_464 | 4 | 6 | 0.000000105637 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_394 | 3 | 4 | 0.0000265466 |
| Lupinus albus | Lalb_Chr12 | 6 | CH_lal_56 | 6 | 6 | 0.000000000000040293 |
| Medicago truncatula | chr8 | 6 | CH_mtr_417 | 4 | 5 | 0.0000000040316 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_98 | 5 | 5 | 0.00000000000483919 |
| Populus trichocarpa | Chr11 | 6 | CH_ptr_437 | 4 | 13 | 0.00000438228 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_67 | 9 | 12 | 6.2131e-24 |
| Sapria himalayana | scaffold49_4090992 | 6 | CH_shi_501 | 2 | 2 | 0.000343083 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_187 | 3 | 3 | 0.0000123676 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_456 | 3 | 4 | 0.0000146386 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_373 | 3 | 3 | 0.00000979883 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |