Functional clusters

Information

  • Type InterPro
  • Description Nitrate transporter

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 5 CH_acertr_146 4 4 0.000000000751597
Acer truncatum chr11 5 CH_acertr_147 4 4 0.000000000751597
Acer truncatum chr8 5 CH_acertr_386 3 3 0.00000213213
Aquilegia oxysepala CHR03 5 CH_aox_471 2 2 0.000481193
Aquilegia oxysepala CHR01 5 CH_aox_472 2 2 0.000481193
Brassica carinata ChrC01 5 CH_bca_243 5 13 0.000000000197754
Brassica carinata ChrB01 5 CH_bca_435 4 7 0.000000020987
Brassica carinata ChrB08 5 CH_bca_855 3 3 0.00000224548
Brassica napus C03 5 CH_bna_204 5 11 0.0000000000827244
Brassica napus C09 5 CH_bna_895 3 5 0.0000256228
Brassica oleracea C3 5 CH_bol_264 4 14 0.00000019054
Beta vulgaris Chr6_EL10_PGA_scaffold0 5 CH_bvu_126 4 6 0.00000000536091
Beta vulgaris Chr7_EL10_PGA_scaffold5 5 CH_bvu_264 3 3 0.00000493415
Camellia sinensis var. sinensis Chr6 5 CH_camsi_1415 2 2 0.000687821
Camellia sinensis var. sinensis Chr11 5 CH_camsi_1416 2 2 0.000687821
Cannabis sativa NC_044375.1 5 CH_cansat_248 3 5 0.000000646683
Coffea canephora chr1 5 CH_ccan_62 4 28 0.0000000000233684
Citrus clementina scaffold_8 5 CH_ccl_316 3 3 0.000000201881
Ceratophyllum demersum 4 5 CH_cde_495 2 2 0.000789796
Ceratophyllum demersum 5 5 CH_cde_80 3 3 0.0000000935703
Corchorus olitorius AWUE01018461.1 5 CH_col_201 2 2 0.000876296
Carica papaya supercontig_65 5 CH_cpa_648 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_2088 5 CH_cqu_465 3 3 0.00000229002
Chenopodium quinoa C_Quinoa_Scaffold_3429 5 CH_cqu_466 3 3 0.00000229002
Chenopodium quinoa C_Quinoa_Scaffold_2493 5 CH_cqu_539 3 4 0.00000915759
Chenopodium quinoa C_Quinoa_Scaffold_2716 5 CH_cqu_540 3 4 0.00000915759
Daucus carota DCARv2_Chr2 5 CH_dca_7 12 22 3.15308e-30
Davidia involucrata GWHABJS00000010 5 CH_din_796 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_110 4 5 0.0000000000474338
Erythranthe guttata scaffold_4 5 CH_egut_136 5 7 0.00000000000569622
Erythranthe guttata scaffold_2 5 CH_egut_440 3 5 0.0000227322
Fragaria vesca Fvb4 5 CH_fve_826 2 2 0.000883652
Glycine max Gm12 5 CH_gma_933 2 2 0.00079707
Helianthus annuus HanXRQChr11 5 CH_han_162 5 7 0.000000000000451916
Helianthus annuus HanXRQChr01 5 CH_han_332 4 7 0.00000000433034
Lotus japonicus chr3 5 CH_lja_518 2 2 0.000429046
Lonicera japonica GWHAAZE00000001 5 CH_lonja_125 6 7 1.01934e-17
Lactuca sativa Lsat_1_v8_lg_1 5 CH_lsa_38 8 11 6.34171e-23
Magnolia biondii Chr18 5 CH_mbi_1010 2 2 0.000291397
Micromonas commoda Chr_01 5 CH_mco_5 3 9 0.0000493092
Malus domestica Chr11 5 CH_mdo_461 3 3 0.000000120796
Manihot esculenta Chromosome11 5 CH_mes_321 3 4 0.000000447414
Marchantia polymorpha scaffold_20 5 CH_mpo_4 9 14 4.49259e-23
Medicago truncatula chr4 5 CH_mtr_1239 2 3 0.000369764
Olea europaea chr8 5 CH_oeu_608 2 2 0.000533789
Oryza sativa ssp. japonica chr02 5 CH_osa_630 2 2 0.000316874
Petunia axillaris Peaxi162Scf00115 5 CH_pax_27 6 6 1.79255e-17
Prunus persica Pp06 5 CH_ppe_747 2 2 0.000447577
Populus trichocarpa Chr09 5 CH_ptr_786 2 2 0.000867002
Salvia bowleyana GWHASIU00000006 5 CH_sbo_310 3 3 0.000000173889
Salix brachista GWHAAZH00000015 5 CH_sbr_588 2 2 0.000378084
Sechium edule LG01 5 CH_sed_386 2 2 0.000214026
Sequoiadendron giganteum chr6 5 CH_sgi_1347 3 4 0.00000234909
Solanum lycopersicum SL4.0ch11 5 CH_sly_301 3 3 0.000000103353
Solanum pennellii Spenn-ch11 5 CH_spe_294 3 3 0.000000166188
Solanum pennellii Spenn-ch06 5 CH_spe_295 3 3 0.000000166188
Solanum tuberosum ST4.03ch11 5 CH_stu_453 3 5 0.00000330801
Theobroma cacao Chromosome_9 5 CH_tca_328 3 3 0.000000281615
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_677 2 2 0.000557543
Acer truncatum chr3 6 CH_acertr_146 4 4 0.000000000751597
Acer truncatum chr11 6 CH_acertr_147 4 4 0.000000000751597
Acer truncatum chr8 6 CH_acertr_386 3 3 0.00000213213
Aquilegia oxysepala CHR03 6 CH_aox_471 2 2 0.000481193
Aquilegia oxysepala CHR01 6 CH_aox_472 2 2 0.000481193
Brassica carinata ChrC01 6 CH_bca_243 5 13 0.000000000197754
Brassica carinata ChrB01 6 CH_bca_435 4 7 0.000000020987
Brassica carinata ChrB08 6 CH_bca_855 3 3 0.00000224548
Brassica napus C03 6 CH_bna_204 5 11 0.0000000000827244
Brassica napus C09 6 CH_bna_895 3 5 0.0000256228
Brassica oleracea C3 6 CH_bol_264 4 14 0.00000019054
Beta vulgaris Chr6_EL10_PGA_scaffold0 6 CH_bvu_126 4 6 0.00000000536091
Beta vulgaris Chr7_EL10_PGA_scaffold5 6 CH_bvu_264 3 3 0.00000493415
Camellia sinensis var. sinensis Chr6 6 CH_camsi_1415 2 2 0.000687821
Camellia sinensis var. sinensis Chr11 6 CH_camsi_1416 2 2 0.000687821
Cannabis sativa NC_044375.1 6 CH_cansat_248 3 5 0.000000646683
Coffea canephora chr1 6 CH_ccan_62 4 28 0.0000000000233684
Citrus clementina scaffold_8 6 CH_ccl_316 3 3 0.000000201881
Ceratophyllum demersum 4 6 CH_cde_495 2 2 0.000789796
Ceratophyllum demersum 5 6 CH_cde_80 3 3 0.0000000935703
Cucumis melo chr12 6 CH_cme_406 2 2 0.000400267
Corchorus olitorius AWUE01018461.1 6 CH_col_201 2 2 0.000876296
Carica papaya supercontig_65 6 CH_cpa_648 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_2088 6 CH_cqu_465 3 3 0.00000229002
Chenopodium quinoa C_Quinoa_Scaffold_3429 6 CH_cqu_466 3 3 0.00000229002
Chenopodium quinoa C_Quinoa_Scaffold_2493 6 CH_cqu_539 3 4 0.00000915759
Chenopodium quinoa C_Quinoa_Scaffold_2716 6 CH_cqu_540 3 4 0.00000915759
Daucus carota DCARv2_Chr2 6 CH_dca_7 12 22 3.15308e-30
Davidia involucrata GWHABJS00000010 6 CH_din_796 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_110 4 5 0.0000000000474338
Erythranthe guttata scaffold_4 6 CH_egut_136 5 7 0.00000000000569622
Erythranthe guttata scaffold_2 6 CH_egut_440 3 5 0.0000227322
Fragaria x ananassa Fvb4-3 6 CH_fan_490 4 39 0.00000212715
Fragaria vesca Fvb4 6 CH_fve_826 2 2 0.000883652
Glycine max Gm12 6 CH_gma_933 2 2 0.00079707
Helianthus annuus HanXRQChr11 6 CH_han_162 5 7 0.000000000000451916
Helianthus annuus HanXRQChr01 6 CH_han_332 4 7 0.00000000433034
Lotus japonicus chr3 6 CH_lja_518 2 2 0.000429046
Lonicera japonica GWHAAZE00000001 6 CH_lonja_125 6 7 1.01934e-17
Lactuca sativa Lsat_1_v8_lg_1 6 CH_lsa_38 8 11 6.34171e-23
Magnolia biondii Chr18 6 CH_mbi_1010 2 2 0.000291397
Micromonas commoda Chr_01 6 CH_mco_5 3 9 0.0000493092
Malus domestica Chr11 6 CH_mdo_461 3 3 0.000000120796
Manihot esculenta Chromosome11 6 CH_mes_321 3 4 0.000000447414
Marchantia polymorpha scaffold_20 6 CH_mpo_4 9 14 4.49259e-23
Medicago truncatula chr4 6 CH_mtr_1239 2 3 0.000369764
Olea europaea chr8 6 CH_oeu_608 2 2 0.000533789
Oryza sativa ssp. japonica chr02 6 CH_osa_630 2 2 0.000316874
Petunia axillaris Peaxi162Scf00115 6 CH_pax_27 6 6 1.79255e-17
Prunus persica Pp06 6 CH_ppe_747 2 2 0.000447577
Populus trichocarpa Chr09 6 CH_ptr_786 2 2 0.000867002
Salvia bowleyana GWHASIU00000006 6 CH_sbo_310 3 3 0.000000173889
Salix brachista GWHAAZH00000015 6 CH_sbr_588 2 2 0.000378084
Sechium edule LG01 6 CH_sed_386 2 2 0.000214026
Sequoiadendron giganteum chr6 6 CH_sgi_1347 3 4 0.00000234909
Solanum lycopersicum SL4.0ch11 6 CH_sly_301 3 3 0.000000103353
Solanum pennellii Spenn-ch11 6 CH_spe_294 3 3 0.000000166188
Solanum pennellii Spenn-ch06 6 CH_spe_295 3 3 0.000000166188
Solanum tuberosum ST4.03ch11 6 CH_stu_453 3 5 0.00000330801
Theobroma cacao Chromosome_9 6 CH_tca_328 3 3 0.000000281615
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_677 2 2 0.000557543

Available child term results

Ontology identifier Description Number of clusters
IPR004737 Nitrate transporter NarK/NarU-like 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001